Best TWAS P=2.99e-09 · Best GWAS P=1.76e-08 conditioned to 1
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | ARFRP1 | 0.07 | 0.07 | lasso | 3 | 0.06 | 5.3e-08 | -4.9 | 5.3 | 1.0e-07 | -0.95 | 0.01 | 0.99 | FALSE |
| 2 | GTEx | Skin Not Sun Exposed Suprapubic | RGS19 | 0.51 | 0.28 | enet | 28 | 0.32 | 4.3e-18 | 3.3 | 5.2 | 2.4e-07 | -0.12 | 0.94 | 0.03 | TRUE |
| 3 | YFS | Blood | LIME1 | 0.12 | 0.19 | enet | 15 | 0.19 | 5.3e-59 | -5.6 | -5.7 | 1.4e-08 | 0.99 | 0.00 | 1.00 | FALSE |
| 4 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SLC2A4RG | 0.03 | 0.01 | blup | 48 | 0.02 | 2.4e-03 | -5.3 | 5.6 | 1.9e-08 | -0.68 | 0.02 | 0.83 | FALSE |
| 5 | The Cancer Genome Atlas | Brain Lower Grade Glioma | LIME1 | 0.02 | 0.03 | blup | 47 | 0.02 | 6.2e-03 | -4.4 | -5.5 | 4.9e-08 | 0.83 | 0.02 | 0.69 | FALSE |
| 6 | The Cancer Genome Atlas | Lung Adenocarcinoma | TNFRSF6B | 0.02 | 0.01 | enet | 7 | 0.01 | 6.9e-03 | -5.3 | -5.5 | 3.4e-08 | 0.92 | 0.02 | 0.88 | FALSE |
| 7 | The Cancer Genome Atlas | Prostate Adenocarcinoma | LIME1 | 0.04 | 0.05 | blup | 47 | 0.05 | 9.0e-06 | -5.6 | -5.9 | 3.0e-09 | 0.97 | 0.01 | 0.99 | TRUE |
| 8 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | LIME1 | 0.10 | 0.02 | blup | 47 | 0.04 | 1.5e-02 | -5.2 | -5.2 | 1.5e-07 | 0.90 | 0.01 | 0.60 | FALSE |
| 9 | The Cancer Genome Atlas | Thyroid Carcinoma | ARFRP1 | 0.04 | 0.00 | blup | 51 | 0.00 | 1.3e-01 | -5.6 | 5.4 | 6.0e-08 | -0.80 | 0.01 | 0.64 | FALSE |