Best TWAS P=9.58e-09 · Best GWAS P=1.29e-09 conditioned to 0.19
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | SENP2 | 0.21 | 0.18 | enet | 33 | 0.19 | 4.2e-22 | -4.7 | 5.6 | 2.3e-08 | -0.11 | 0.72 | 0.28 | TRUE |
| 2 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ETV5 | 0.03 | 0.01 | blup | 55 | 0.02 | 1.3e-03 | -6.0 | -5.7 | 9.6e-09 | 0.82 | 0.01 | 0.86 | TRUE |