TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Qualifications: College or University degree
:
→
chr1:40,799,427-42,542,658
Best TWAS P=1.17e-12 · Best GWAS P=2.95e-11 conditioned to 3.83e-05
40.8M
41M
41.2M
41.4M
41.6M
41.8M
42M
42.2M
42.4M
42.6M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
GTEx
Cells Transformed fibroblasts
FOXO6
0.27
0.16
lasso
6
0.32
1.0e-24
-5.6
-7.1
1.2e-12
0.41
0.84
0.16
TRUE
3
ROSMAP
Brain Pre-frontal Cortex
FOXO6
0.07
0.03
enet
14
0.05
1.5e-06
-4.6
-6.8
1.1e-11
0.35
0.69
0.26
FALSE
1
GTEx
Artery Tibial
SCMH1
0.09
0.01
lasso
3
0.00
1.4e-01
2.5
5.4
6.5e-08
-0.56
0.13
0.66
FALSE