TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Qualifications: None of the above
:
←
→
chr1:92,957,826-94,426,916
Best TWAS P=1.37e-09 · Best GWAS P=2.88e-07 conditioned to 0.876
93M
93.2M
93.4M
93.6M
93.8M
94M
94.2M
94.4M
0
2
4
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
The Cancer Genome Atlas
Brain Lower Grade Glioma
TMED5
0.08
0.06
enet
12
0.07
3.5e-08
5.1
-6.1
1.4e-09
-0.86
0.01
0.99
TRUE
1
GTEx
Spleen
CCDC18
0.29
0.07
lasso
10
0.15
9.2e-05
5.1
-5.5
3.3e-08
-0.92
0.03
0.92
FALSE
3
The Cancer Genome Atlas
Thyroid Carcinoma
DR1
0.16
0.18
blup
29
0.19
4.1e-18
5.0
5.1
3.0e-07
0.94
0.00
0.99
FALSE