726 significantly associated models · 136 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 43073464 | 45157738 | 12 | 3 | 2.0e-13 | 2.2e-15 | 3.1e-01 | 98 | MED8 RP11-7O11.3 ST3GAL3 |
2 | 1 | 71163715 | 73435171 | 1 | 1 | 4.8e-10 | 4.2e-09 | 4.0e-04 | 64 | NEGR1 |
3 | 1 | 92957826 | 94426916 | 3 | 1 | 1.4e-09 | 2.9e-07 | 8.8e-01 | 100 | TMED5 |
4 | 1 | 109316076 | 110716511 | 1 | 1 | 6.3e-08 | 7.4e-07 | 4.5e-02 | 84 | SYPL2 |
5 | 2 | 43899918 | 45698128 | 1 | 1 | 3.6e-09 | 8.4e-10 | 4.7e-02 | 90 | CAMKMT |
6 | 2 | 99922967 | 101731705 | 3 | 1 | 6.8e-09 | 6.5e-09 | 1.4e-01 | 93 | CHST10 |
7 | 2 | 106725928 | 108199394 | 1 | 1 | 1.2e-07 | 1.9e-07 | 1.0e+00 | 100 | ST6GAL2 |
8 | 3 | 16154636 | 17814553 | 1 | 1 | 2.2e-08 | 2.7e-09 | 1.8e-02 | 84 | PLCL2 |
9 | 3 | 48268509 | 51009435 | 26 | 2 | 2.2e-15 | 2.1e-13 | 1.2e-01 | 96 | GPX1 RBM6 |
10 | 3 | 52047421 | 53860103 | 3 | 1 | 1.7e-07 | 3.5e-08 | 8.0e-02 | 90 | NEK4 |
11 | 3 | 107181540 | 108633112 | 1 | 1 | 1.0e-07 | 2.0e-06 | 1.4e-01 | 90 | IFT57 |
12 | 3 | 124558741 | 125238099 | 1 | 1 | 1.9e-07 | 7.7e-08 | 1.4e-01 | 92 | SLC12A8 |
13 | 4 | 2233366 | 3740612 | 2 | 1 | 2.7e-07 | 5.6e-08 | 3.7e-07 | 12 | MFSD10 |
14 | 4 | 105598022 | 107092169 | 1 | 1 | 3.0e-09 | 3.2e-09 | 1.3e-02 | 82 | PPA2 |
15 | 5 | 26181001 | 27729100 | 1 | 1 | 2.2e-07 | 6.9e-09 | 2.3e-04 | 60 | CDH9 |
16 | 5 | 59193824 | 61156570 | 5 | 2 | 1.9e-17 | 3.2e-17 | 7.0e-01 | 100 | ELOVL7 |
17 | 5 | 87006055 | 88875673 | 2 | 2 | 4.5e-10 | 7.9e-17 | 2.0e-08 | 55 | CTC-498M16.2 MEF2C |
18 | 5 | 176132977 | 177591495 | 3 | 1 | 5.9e-09 | 1.0e-08 | 1.0e+00 | 100 | DBN1 |
19 | 6 | 87530372 | 88997402 | 1 | 1 | 2.8e-08 | 2.4e-08 | 1.0e+00 | 100 | RARS2 |
20 | 7 | 23913624 | 25432157 | 1 | 1 | 3.5e-08 | 2.2e-08 | 1.0e+00 | 100 | MPP6 |
21 | 8 | 30012514 | 31433801 | 1 | 1 | 1.8e-07 | 9.3e-08 | 1.0e-01 | 91 | TEX15 |
22 | 8 | 142629143 | 144515639 | 2 | 3 | 2.2e-10 | 6.9e-11 | 4.9e-03 | 81 | THEM6 TSNARE1 |
23 | 9 | 111008699 | 112472083 | 1 | 1 | 2.5e-07 | 2.2e-06 | 3.3e-02 | 80 | CTNNAL1 |
24 | 10 | 10349662 | 12076043 | 1 | 1 | 1.6e-08 | 7.7e-08 | 1.0e-02 | 77 | CELF2 |
25 | 10 | 64195778 | 65911294 | 4 | 1 | 3.4e-15 | 1.6e-15 | 1.1e-03 | 83 | NRBF2 |
26 | 10 | 102853189 | 104242886 | 2 | 1 | 2.6e-08 | 1.0e-08 | 1.5e-03 | 69 | NPM3 |
27 | 10 | 133048749 | 134482926 | 2 | 2 | 7.8e-10 | 2.2e-12 | 8.7e-01 | 100 | BNIP3 PPP2R2D |
28 | 11 | 94805896 | 96276010 | 4 | 1 | 1.9e-13 | 2.9e-13 | 2.2e-01 | 97 | AP001877.1 |
29 | 11 | 116805204 | 117308936 | 1 | 1 | 6.5e-08 | 1.2e-04 | 6.5e-01 | 99 | SIDT2 |
30 | 12 | 49556303 | 50927881 | 1 | 1 | 4.7e-08 | 4.9e-05 | 3.0e-02 | 71 | BCDIN3D |
31 | 12 | 55677395 | 57125879 | 5 | 1 | 5.4e-11 | 1.9e-10 | 1.0e+00 | 100 | SUOX |
32 | 12 | 122258047 | 124591385 | 13 | 2 | 1.4e-13 | 6.2e-12 | 6.6e-01 | 100 | CDK2AP1 RSRC2 |
33 | 13 | 31078511 | 32595740 | 1 | 1 | 2.2e-07 | 1.7e-06 | 1.8e-01 | 92 | B3GALTL |
34 | 14 | 73853137 | 75366447 | 1 | 1 | 5.6e-08 | 3.0e-06 | 8.3e-04 | 49 | LIN52 |
35 | 16 | 86671 | 1432491 | 1 | 1 | 1.4e-07 | 1.0e-06 | 7.4e-01 | 100 | WDR24 |
36 | 16 | 24614505 | 25167985 | 1 | 1 | 1.5e-07 | 9.1e-09 | 1.6e-03 | 70 | SLC5A11 |
37 | 16 | 27655848 | 29595483 | 19 | 1 | 3.6e-10 | 8.8e-10 | 5.3e-01 | 99 | SULT1A1 |
38 | 16 | 52828325 | 54235440 | 2 | 1 | 2.5e-08 | 6.7e-09 | 8.6e-02 | 91 | RBL2 |
39 | 17 | 34815551 | 35675511 | 1 | 1 | 1.5e-07 | 1.3e-06 | 5.4e-04 | 49 | CTB-75G16.3 |
40 | 19 | 45064435 | 46506809 | 2 | 1 | 1.3e-11 | 1.5e-11 | 1.0e+00 | 100 | CKM |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Cerebellar Hemisphere | 9 | 0.60 | 2.4 |
GTEx | Colon Sigmoid | 9 | 0.62 | 2.4 |
GTEx | Stomach | 12 | 0.83 | 2.4 |
GTEx | Adipose Visceral Omentum | 11 | 0.54 | 2.3 |
GTEx | Brain Cerebellum | 10 | 0.50 | 2.3 |
GTEx | Brain Frontal Cortex BA9 | 5 | 0.54 | 2.3 |
GTEx | Brain Nucleus accumbens basal ganglia | 3 | 0.35 | 2.3 |
GTEx | Breast Mammary Tissue | 13 | 0.66 | 2.3 |
GTEx | Breast Mammary Tissue (Female) | 12 | 0.73 | 2.3 |
GTEx | Esophagus Gastroesophageal Junction | 7 | 0.48 | 2.3 |
GTEx | Esophagus Muscularis | 22 | 0.68 | 2.3 |
GTEx | Heart Atrial Appendage | 9 | 0.57 | 2.3 |
GTEx | Muscle Skeletal | 18 | 0.62 | 2.3 |
GTEx | Ovary | 5 | 0.55 | 2.3 |
GTEx | Pancreas | 14 | 0.86 | 2.3 |
GTEx | Skin Not Sun Exposed Suprapubic | 16 | 0.65 | 2.3 |
GTEx | Spleen | 7 | 0.50 | 2.3 |
GTEx | Testis | 14 | 0.44 | 2.3 |
GTEx | Adipose Subcutaneous | 17 | 0.49 | 2.2 |
GTEx | Artery Aorta | 17 | 0.57 | 2.2 |
GTEx | Artery Coronary | 2 | 0.17 | 2.2 |
GTEx | Artery Tibial | 26 | 0.69 | 2.2 |
GTEx | Brain Caudate basal ganglia | 5 | 0.54 | 2.2 |
GTEx | Brain Cortex | 7 | 0.68 | 2.2 |
GTEx | Brain Hippocampus | 2 | 0.38 | 2.2 |
GTEx | Brain Putamen basal ganglia | 3 | 0.48 | 2.2 |
GTEx | Cells EBV-transformed lymphocytes | 5 | 0.35 | 2.2 |
GTEx | Cells Transformed fibroblasts | 24 | 0.57 | 2.2 |
GTEx | Colon Transverse | 12 | 0.58 | 2.2 |
GTEx | Esophagus Mucosa | 19 | 0.57 | 2.2 |
GTEx | Heart Left Ventricle | 8 | 0.52 | 2.2 |
GTEx | Liver | 3 | 0.42 | 2.2 |
GTEx | Lung | 15 | 0.52 | 2.2 |
GTEx | Nerve Tibial | 24 | 0.56 | 2.2 |
GTEx | Pituitary | 4 | 0.36 | 2.2 |
GTEx | Prostate | 5 | 0.60 | 2.2 |
GTEx | Skin Sun Exposed Lower leg | 18 | 0.49 | 2.2 |
GTEx | Small Intestine Terminal Ileum | 4 | 0.87 | 2.2 |
GTEx | Thyroid | 19 | 0.48 | 2.2 |
GTEx | Vagina | 5 | 0.79 | 2.2 |
ROSMAP | Brain Pre-frontal Cortex | 19 | 0.43 | 2.2 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 5 | 0.49 | 2.2 |
GTEx | Breast Mammary Tissue (Male) | 3 | 0.25 | 2.1 |
GTEx | Uterus | 1 | 0.18 | 2.1 |
GTEx | Whole Blood | 6 | 0.30 | 2.1 |
METSIM | Adipose | 17 | 0.37 | 2.1 |
CommonMind | Brain Pre-frontal Cortex | 16 | 0.30 | 2.1 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 7 | 0.42 | 2.1 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 5 | 0.46 | 2.1 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 12 | 0.44 | 2.1 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 8 | 0.39 | 2.1 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 16 | 0.37 | 2.1 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 8 | 0.72 | 2.1 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 14 | 0.48 | 2.1 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 11 | 0.66 | 2.1 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 7 | 0.53 | 2.1 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 2 | 0.29 | 2.1 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 2 | 0.19 | 2.1 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 6 | 0.36 | 2.1 |
GTEx | Adrenal Gland | 4 | 0.27 | 2.0 |
GTEx | Brain Hypothalamus | 1 | 0.17 | 2.0 |
NTR | Blood | 5 | 0.21 | 2.0 |
YFS | Blood | 14 | 0.30 | 2.0 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 14 | 0.32 | 2.0 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 8 | 0.39 | 2.0 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 14 | 0.34 | 2.0 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 10 | 0.40 | 2.0 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 6 | 0.38 | 2.0 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 19 | 0.41 | 2.0 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 2 | 0.37 | 2.0 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 4 | 0.31 | 2.0 |
The Cancer Genome Atlas | Thyroid Carcinoma | 17 | 0.33 | 2.0 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 2 | 0.39 | 2.0 |
The Cancer Genome Atlas | Esophageal Carcinoma | 1 | 0.15 | 1.9 |