TWAS
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Models
Genes
Traits
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Traits
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Vascular/heart problems diagnosed by doctor
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chr3:26,563,909-28,211,713
Best TWAS P=2.97e-16 · Best GWAS P=1.57e-17 conditioned to 0.0107
26.6M
26.8M
27M
27.2M
27.4M
27.6M
27.8M
28M
28.2M
0
5
10
15
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
GTEx
Artery Aorta
SLC4A7
0.10
0.08
enet
15
0.08
5.4e-05
8.5
8.2
3.0e-16
0.92
0.00
0.99
TRUE
4
GTEx
Cells Transformed fibroblasts
SLC4A7
0.15
0.02
enet
21
0.04
4.0e-04
8.5
7.4
1.8e-13
0.80
0.00
0.99
FALSE
1
CommonMind
Brain Pre-frontal Cortex
NEK10
0.04
0.03
blup
450
0.03
9.5e-05
-5.4
6.9
6.5e-12
0.57
0.60
0.15
FALSE
5
The Cancer Genome Atlas
Breast Invasive Carcinoma
NEK10
0.02
0.02
lasso
4
0.02
1.3e-05
5.4
-5.5
3.6e-08
-0.69
0.60
0.36
FALSE
2
CommonMind
Brain Pre-frontal Cortex
SLC4A7
0.09
0.00
enet
27
0.04
2.9e-05
-7.2
5.4
6.3e-08
0.40
0.09
0.59
FALSE