Best TWAS P=5.87e-13 · Best GWAS P=3.15e-14 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | HAUS8 | 0.11 | 0.09 | lasso | 3 | 0.08 | 5.4e-07 | -5.7 | 5.6 | 1.7e-08 | -0.62 | 0.31 | 0.68 | FALSE |
2 | GTEx | Artery Aorta | HAUS8 | 0.18 | 0.12 | lasso | 2 | 0.09 | 7.3e-06 | -5.8 | 5.8 | 5.5e-09 | -0.63 | 0.33 | 0.62 | FALSE |
3 | GTEx | Artery Tibial | HAUS8 | 0.16 | 0.02 | lasso | 7 | 0.02 | 4.7e-03 | -5.8 | 6.5 | 1.0e-10 | -0.62 | 0.23 | 0.70 | FALSE |
4 | GTEx | Artery Tibial | CTD-3032J10.3 | 0.14 | 0.01 | lasso | 5 | 0.01 | 6.4e-02 | -7.6 | 6.9 | 6.9e-12 | -0.96 | 0.00 | 0.96 | TRUE |
5 | GTEx | Brain Cerebellar Hemisphere | HAUS8 | 0.44 | 0.15 | lasso | 7 | 0.11 | 8.1e-04 | -5.7 | 5.7 | 1.0e-08 | -0.57 | 0.23 | 0.19 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | HAUS8 | 0.12 | 0.05 | enet | 19 | 0.05 | 1.0e-04 | -5.8 | 6.5 | 8.1e-11 | -0.53 | 0.60 | 0.21 | FALSE |
7 | GTEx | Esophagus Muscularis | MYO9B | 0.13 | 0.02 | lasso | 5 | 0.05 | 9.5e-04 | -4.8 | 7.2 | 5.9e-13 | -0.62 | 0.03 | 0.95 | TRUE |
8 | GTEx | Esophagus Muscularis | HAUS8 | 0.20 | 0.11 | lasso | 4 | 0.09 | 5.1e-06 | -5.7 | 5.5 | 3.4e-08 | -0.59 | 0.67 | 0.16 | FALSE |
9 | GTEx | Muscle Skeletal | HAUS8 | 0.15 | 0.10 | lasso | 4 | 0.08 | 1.6e-08 | -5.7 | 6.1 | 1.2e-09 | -0.62 | 1.00 | 0.00 | FALSE |
10 | GTEx | Stomach | PLVAP | 0.27 | 0.01 | lasso | 5 | 0.00 | 5.0e-01 | -6.6 | -5.3 | 1.2e-07 | 0.62 | 0.04 | 0.33 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | MYO9B | 0.11 | 0.01 | lasso | 8 | 0.07 | 5.4e-09 | -7.1 | 5.5 | 4.1e-08 | -0.65 | 0.06 | 0.94 | FALSE |
12 | ROSMAP | Brain Pre-frontal Cortex | HAUS8 | 0.05 | 0.05 | enet | 7 | 0.05 | 7.1e-07 | -5.7 | 5.7 | 9.2e-09 | -0.63 | 0.65 | 0.34 | FALSE |
13 | The Cancer Genome Atlas | Breast Invasive Carcinoma | HAUS8 | 0.05 | 0.06 | enet | 12 | 0.06 | 2.9e-12 | -5.7 | 6.1 | 1.1e-09 | -0.57 | 1.00 | 0.00 | FALSE |
14 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | HAUS8 | 0.10 | 0.07 | blup | 55 | 0.07 | 3.2e-04 | -5.7 | 5.3 | 1.2e-07 | -0.74 | 0.04 | 0.92 | FALSE |
15 | The Cancer Genome Atlas | Colon Adenocarcinoma | HAUS8 | 0.12 | 0.06 | lasso | 5 | 0.06 | 1.8e-04 | -5.8 | 5.6 | 2.4e-08 | -0.58 | 0.39 | 0.32 | FALSE |
16 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | HAUS8 | 0.08 | 0.07 | blup | 55 | 0.07 | 6.7e-08 | -5.8 | 5.5 | 4.8e-08 | -0.53 | 0.99 | 0.01 | FALSE |
17 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | HAUS8 | 0.09 | 0.14 | lasso | 4 | 0.12 | 5.9e-14 | -5.7 | 6.1 | 1.1e-09 | -0.65 | 1.00 | 0.00 | FALSE |
18 | The Cancer Genome Atlas | Lung Adenocarcinoma | HAUS8 | 0.04 | 0.04 | lasso | 2 | 0.03 | 1.6e-04 | -5.8 | 5.4 | 5.1e-08 | -0.57 | 0.56 | 0.05 | FALSE |
19 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | HAUS8 | 0.06 | 0.04 | enet | 4 | 0.05 | 3.9e-06 | -4.8 | 5.6 | 1.9e-08 | -0.54 | 0.91 | 0.01 | FALSE |
20 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | HAUS8 | 0.20 | 0.13 | lasso | 2 | 0.11 | 2.4e-05 | -5.7 | 5.5 | 3.2e-08 | -0.61 | 0.44 | 0.17 | FALSE |
21 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | HAUS8 | 0.21 | 0.11 | enet | 9 | 0.10 | 6.2e-05 | 5.5 | 7.1 | 1.8e-12 | -0.56 | 0.10 | 0.48 | FALSE |
22 | The Cancer Genome Atlas | Prostate Adenocarcinoma | HAUS8 | 0.13 | 0.10 | blup | 55 | 0.11 | 7.8e-12 | -5.8 | 6.0 | 1.7e-09 | -0.49 | 1.00 | 0.00 | FALSE |
23 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MYO9B | 0.14 | 0.07 | blup | 103 | 0.10 | 5.0e-11 | -7.6 | 5.8 | 6.0e-09 | -0.59 | 0.00 | 1.00 | FALSE |
24 | The Cancer Genome Atlas | Stomach Adenocarcinoma | HAUS8 | 0.06 | 0.04 | blup | 55 | 0.04 | 1.0e-03 | -5.7 | 5.9 | 3.0e-09 | -0.64 | 0.05 | 0.31 | FALSE |
25 | The Cancer Genome Atlas | Thyroid Carcinoma | HAUS8 | 0.04 | 0.06 | lasso | 2 | 0.05 | 2.2e-05 | -5.7 | 6.1 | 9.2e-10 | -0.69 | 0.14 | 0.82 | FALSE |