Best TWAS P=5.66e-14 · Best GWAS P=1.91e-12 conditioned to 0.0996
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | SLC45A1 | 0.04 | 0.05 | enet | 9 | 0.02 | 1.8e-03 | 5.3 | 6.3 | 3.1e-10 | 0.75 | 0.69 | 0.24 | FALSE |
| 2 | GTEx | Adipose Subcutaneous | RERE | 0.20 | 0.23 | lasso | 2 | 0.24 | 1.7e-19 | -5.6 | -6.3 | 4.0e-10 | -0.66 | 0.98 | 0.02 | FALSE |
| 3 | GTEx | Adipose Subcutaneous | RP5-1115A15.1 | 0.14 | 0.07 | enet | 20 | 0.10 | 2.6e-08 | 6.6 | -6.2 | 4.7e-10 | -0.81 | 0.06 | 0.94 | FALSE |
| 4 | GTEx | Adipose Visceral Omentum | RERE | 0.22 | 0.17 | lasso | 5 | 0.17 | 5.2e-09 | 6.9 | -6.4 | 1.5e-10 | -0.86 | 0.06 | 0.94 | FALSE |
| 5 | GTEx | Brain Caudate basal ganglia | KIF1B | 0.25 | 0.00 | lasso | 5 | 0.02 | 1.1e-01 | 4.7 | 5.7 | 1.3e-08 | -0.03 | 0.04 | 0.31 | TRUE |
| 6 | GTEx | Breast Mammary Tissue | RERE | 0.19 | 0.08 | enet | 10 | 0.14 | 8.0e-08 | -5.9 | -6.3 | 2.3e-10 | -0.73 | 0.19 | 0.78 | FALSE |
| 7 | GTEx | Breast Mammary Tissue | RP5-1115A15.1 | 0.10 | 0.07 | lasso | 2 | 0.03 | 7.0e-03 | -5.6 | -5.6 | 2.0e-08 | -0.55 | 0.44 | 0.33 | FALSE |
| 8 | GTEx | Cells Transformed fibroblasts | RERE | 0.12 | 0.08 | lasso | 4 | 0.05 | 6.0e-05 | -5.8 | -6.0 | 2.6e-09 | -0.60 | 0.70 | 0.26 | FALSE |
| 9 | GTEx | Esophagus Mucosa | RERE | 0.13 | 0.16 | lasso | 3 | 0.16 | 7.2e-11 | 6.9 | -6.9 | 5.7e-12 | -0.86 | 0.03 | 0.97 | FALSE |
| 10 | GTEx | Esophagus Mucosa | RP5-1115A15.1 | 0.06 | 0.06 | lasso | 4 | 0.05 | 3.0e-04 | 6.9 | -7.1 | 1.2e-12 | -0.87 | 0.05 | 0.88 | FALSE |
| 11 | GTEx | Lung | RERE | 0.07 | 0.05 | lasso | 4 | 0.05 | 2.0e-04 | 6.7 | -6.9 | 6.5e-12 | -0.98 | 0.02 | 0.97 | FALSE |
| 12 | GTEx | Lung | RP5-1115A15.1 | 0.05 | 0.08 | lasso | 1 | 0.07 | 1.0e-05 | 6.6 | -6.6 | 3.8e-11 | -0.86 | 0.04 | 0.93 | FALSE |
| 13 | GTEx | Nerve Tibial | RERE | 0.12 | 0.09 | enet | 16 | 0.11 | 5.6e-08 | -5.8 | -6.1 | 9.3e-10 | -0.59 | 0.90 | 0.10 | FALSE |
| 14 | GTEx | Pancreas | RERE | 0.11 | 0.12 | lasso | 4 | 0.07 | 5.9e-04 | -5.9 | -6.5 | 8.5e-11 | -0.59 | 0.21 | 0.41 | FALSE |
| 15 | GTEx | Skin Not Sun Exposed Suprapubic | RERE | 0.12 | 0.05 | lasso | 4 | 0.05 | 1.3e-03 | 6.7 | -5.6 | 2.5e-08 | -0.81 | 0.08 | 0.87 | FALSE |
| 16 | GTEx | Skin Not Sun Exposed Suprapubic | RP5-1115A15.1 | 0.08 | 0.04 | enet | 8 | 0.04 | 3.0e-03 | 7.0 | -7.0 | 2.3e-12 | -0.97 | 0.02 | 0.95 | FALSE |
| 17 | GTEx | Skin Sun Exposed Lower leg | RERE | 0.14 | 0.05 | lasso | 8 | 0.08 | 4.3e-07 | 6.9 | -6.3 | 3.3e-10 | -0.88 | 0.04 | 0.96 | FALSE |
| 18 | GTEx | Skin Sun Exposed Lower leg | RP5-1115A15.1 | 0.07 | 0.03 | enet | 13 | 0.03 | 1.5e-03 | 6.9 | -6.1 | 1.4e-09 | -0.81 | 0.05 | 0.92 | FALSE |
| 19 | GTEx | Thyroid | RP5-1115A15.1 | 0.09 | 0.12 | lasso | 2 | 0.09 | 1.5e-07 | 6.6 | -6.8 | 9.5e-12 | -0.85 | 0.09 | 0.91 | FALSE |
| 20 | GTEx | Whole Blood | RERE | 0.19 | 0.15 | lasso | 4 | 0.13 | 2.7e-12 | 6.9 | -7.0 | 3.1e-12 | -0.86 | 0.03 | 0.97 | FALSE |
| 21 | METSIM | Adipose | RERE | 0.08 | 0.12 | lasso | 17 | 0.13 | 1.8e-19 | -5.6 | -7.5 | 5.7e-14 | -0.84 | 0.50 | 0.50 | TRUE |
| 22 | NTR | Blood | RERE | 0.04 | 0.04 | lasso | 8 | 0.03 | 2.0e-11 | 7.0 | -6.9 | 5.6e-12 | -0.94 | 0.02 | 0.98 | FALSE |
| 23 | ROSMAP | Brain Pre-frontal Cortex | RERE | 0.15 | 0.15 | lasso | 7 | 0.15 | 1.5e-18 | -5.8 | -6.3 | 2.9e-10 | -0.67 | 0.96 | 0.04 | FALSE |
| 24 | YFS | Blood | ENO1 | 0.07 | 0.06 | lasso | 7 | 0.06 | 5.1e-19 | -5.3 | 6.0 | 2.6e-09 | 0.51 | 0.98 | 0.02 | FALSE |
| 25 | YFS | Blood | RERE | 0.09 | 0.15 | lasso | 4 | 0.16 | 5.7e-49 | 6.7 | -7.0 | 3.1e-12 | -0.86 | 0.11 | 0.89 | FALSE |
| 26 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RERE | 0.02 | 0.03 | lasso | 2 | 0.03 | 4.7e-07 | 6.7 | -6.5 | 6.7e-11 | -0.87 | 0.08 | 0.91 | FALSE |
| 27 | The Cancer Genome Atlas | Esophageal Carcinoma | RERE | 0.10 | 0.07 | blup | 154 | 0.06 | 5.2e-03 | 6.2 | -6.4 | 1.5e-10 | -0.92 | 0.04 | 0.55 | FALSE |
| 28 | The Cancer Genome Atlas | Glioblastoma Multiforme | PEX14 | 0.12 | 0.00 | blup | 123 | 0.05 | 9.9e-03 | 4.9 | -5.3 | 9.2e-08 | -0.06 | 0.02 | 0.64 | FALSE |
| 29 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | RERE | 0.04 | 0.02 | blup | 154 | 0.02 | 8.7e-04 | 6.5 | -5.8 | 7.7e-09 | -0.90 | 0.03 | 0.89 | FALSE |
| 30 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | RERE | 0.22 | 0.04 | lasso | 10 | 0.08 | 4.1e-04 | 6.9 | -7.0 | 3.4e-12 | -0.81 | 0.10 | 0.72 | FALSE |
| 31 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | RERE | 0.12 | 0.01 | enet | 10 | 0.03 | 4.6e-02 | 6.5 | -5.7 | 1.0e-08 | -0.86 | 0.03 | 0.62 | FALSE |