1248 significantly associated models · 287 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 2235672 | 2742491 | 2 | 1 | 1.1e-09 | 2.4e-10 | 1.0e-03 | 73 | TNFRSF14 |
2 | 1 | 7686056 | 11137778 | 6 | 2 | 5.7e-14 | 1.9e-12 | 1.0e-01 | 94 | KIF1B RERE |
3 | 1 | 24372971 | 25768937 | 1 | 1 | 7.0e-10 | 2.2e-14 | 1.3e-08 | 44 | CLIC4 |
4 | 1 | 26399230 | 26917014 | 2 | 1 | 8.3e-08 | 2.7e-07 | 1.0e+00 | 100 | CD52 |
5 | 1 | 91271668 | 92681020 | 1 | 1 | 1.5e-07 | 4.4e-05 | 5.4e-01 | 98 | CDC7 |
6 | 1 | 151313774 | 152712747 | 2 | 5 | 5.5e-21 | 4.3e-19 | 8.6e-01 | 100 | LINGO4 S100A11 |
7 | 1 | 153024634 | 155138557 | 6 | 1 | 7.4e-13 | 8.6e-14 | 3.7e-04 | 77 | IL6R |
8 | 1 | 160452218 | 161885352 | 4 | 1 | 3.6e-09 | 1.7e-09 | 1.3e-01 | 94 | PPOX |
9 | 1 | 166702558 | 168182443 | 1 | 1 | 7.4e-20 | 1.3e-20 | 1.0e+00 | 100 | CD247 |
10 | 1 | 172311679 | 173713130 | 2 | 1 | 1.4e-11 | 1.8e-11 | 1.0e+00 | 100 | TNFSF4 |
11 | 2 | 27971195 | 29344127 | 1 | 1 | 7.8e-10 | 1.7e-07 | 1.8e-01 | 94 | RP11-373D23.3 |
12 | 2 | 29976100 | 31563885 | 1 | 1 | 1.3e-07 | 1.9e-06 | 1.0e+00 | 100 | LCLAT1 |
13 | 2 | 60466491 | 62107632 | 5 | 1 | 9.3e-10 | 1.1e-08 | 1.0e-07 | 13 | KIAA1841 |
14 | 2 | 101994731 | 104027106 | 7 | 7 | 1.2e-84 | 2.4e-72 | 1.0e+00 | 100 | IL18RAP IL1R1 IL1RL1 SLC9A2 |
15 | 2 | 197134790 | 200117777 | 6 | 1 | 2.3e-10 | 6.1e-11 | 7.8e-03 | 84 | SF3B1 |
16 | 3 | 55969663 | 57412804 | 2 | 1 | 4.8e-08 | 3.6e-09 | 2.4e-02 | 85 | FAM208A |
17 | 4 | 38079294 | 39824758 | 5 | 2 | 3.5e-58 | 6.7e-60 | 4.4e-03 | 97 | FAM114A1 TLR1 |
18 | 4 | 102852939 | 104627833 | 4 | 1 | 1.3e-09 | 6.4e-09 | 2.9e-01 | 97 | NFKB1 |
19 | 4 | 122377715 | 124935698 | 3 | 4 | 8.0e-34 | 2.7e-30 | 1.0e+00 | 100 | KIAA1109 SPATA5 |
20 | 5 | 34920257 | 36637217 | 4 | 2 | 5.9e-38 | 2.3e-40 | 1.0e+00 | 100 | IL7R |
21 | 5 | 108927715 | 111770880 | 6 | 9 | 2.0e-45 | 4.3e-60 | NaN | NaN | CAMK4 SLC25A46 TMEM232 TSLP WDR36 |
22 | 5 | 130830617 | 132900729 | 15 | 7 | 3.2e-17 | 1.1e-18 | NaN | NaN | C5orf56 KIF3A PDLIM4 SLC22A5 |
23 | 5 | 140298815 | 142230251 | 2 | 2 | 7.9e-12 | 3.8e-11 | 5.6e-01 | 99 | AC008781.7 NDFIP1 |
24 | 5 | 176067604 | 177426530 | 2 | 1 | 3.6e-09 | 1.3e-08 | 2.3e-01 | 96 | RGS14 |
25 | 6 | 25266147 | 26689223 | 2 | 1 | 5.5e-12 | 1.5e-12 | 1.9e-02 | 89 | TRIM38 |
26 | 6 | 89941356 | 91704536 | 1 | 1 | 3.8e-14 | 2.7e-18 | 7.2e-06 | 74 | BACH2 |
27 | 6 | 107328319 | 108840870 | 1 | 1 | 1.8e-07 | 7.3e-07 | 2.9e-02 | 80 | SCML4 |
28 | 6 | 134905567 | 136516257 | 2 | 2 | 1.6e-09 | 1.1e-09 | 5.9e-02 | 90 | AHI1 |
29 | 7 | 27623776 | 28468319 | 1 | 1 | 1.0e-09 | 1.4e-16 | 2.6e-08 | 55 | JAZF1 |
30 | 7 | 76254810 | 77744459 | 1 | 1 | 2.2e-07 | 1.2e-09 | 8.9e-04 | 70 | GSAP |
31 | 9 | 4659111 | 7345375 | 5 | 5 | 1.4e-19 | 1.0e-36 | 3.1e-10 | 75 | ERMP1 GLDC KIAA1432 RANBP6 |
32 | 9 | 122881960 | 124487495 | 5 | 1 | 6.8e-10 | 7.6e-10 | 1.0e+00 | 100 | TRAF1 |
33 | 9 | 126321003 | 127872298 | 2 | 1 | 3.9e-11 | 8.8e-10 | 1.0e-02 | 82 | NEK6 |
34 | 9 | 130884753 | 132281720 | 1 | 1 | 6.9e-08 | 7.7e-08 | 2.0e-01 | 94 | ENDOG |
35 | 9 | 135883620 | 137326408 | 2 | 1 | 2.8e-16 | 2.0e-18 | 1.9e-07 | 65 | ABO |
36 | 10 | 5238196 | 7317647 | 3 | 3 | 8.8e-10 | 4.7e-22 | 1.9e-14 | 37 | IL2RA PRKCQ |
37 | 10 | 103527782 | 105275242 | 8 | 1 | 1.7e-11 | 1.8e-10 | 5.4e-01 | 99 | ACTR1A |
38 | 11 | 36068766 | 36732916 | 1 | 1 | 9.4e-09 | 4.7e-10 | 2.0e-05 | 53 | PRR5L |
39 | 11 | 61338245 | 61884025 | 1 | 1 | 2.6e-07 | 2.1e-06 | 1.3e-01 | 90 | FADS2 |
40 | 11 | 64669105 | 66456387 | 8 | 2 | 1.0e-10 | 7.0e-18 | 1.5e-01 | 97 | DKFZp761E198 OVOL1 |
41 | 11 | 75204622 | 77536441 | 5 | 4 | 3.4e-42 | 3.2e-67 | 2.1e-17 | 76 | LRRC32 RP11-111M22.3 WNT11 |
42 | 11 | 110721187 | 112491227 | 7 | 1 | 3.1e-17 | 6.7e-19 | 1.0e+00 | 100 | SIK2 |
43 | 11 | 118341649 | 119751585 | 2 | 1 | 1.7e-08 | 3.4e-11 | 3.5e-07 | 41 | NLRX1 |
44 | 12 | 50110317 | 50601155 | 1 | 1 | 9.5e-08 | 4.2e-08 | 3.6e-02 | 85 | AQP5 |
45 | 12 | 52820944 | 53321436 | 1 | 1 | 7.4e-08 | 3.1e-06 | 5.7e-01 | 98 | KRT1 |
46 | 12 | 55601472 | 58677299 | 13 | 3 | 1.8e-21 | 1.4e-27 | 2.3e-02 | 96 | GPR182 STAT6 SUOX |
47 | 12 | 120502726 | 122037099 | 1 | 1 | 1.5e-09 | 4.9e-10 | 5.9e-03 | 80 | SPPL3 |
48 | 12 | 122713991 | 124591385 | 11 | 1 | 2.9e-11 | 5.2e-10 | 8.2e-01 | 100 | MPHOSPH9 |
49 | 13 | 40440805 | 41928314 | 1 | 1 | 2.7e-18 | 5.9e-13 | 1.4e-02 | 88 | FOXO1 |
50 | 13 | 99155113 | 100728229 | 1 | 2 | 1.1e-13 | 1.8e-12 | 7.4e-03 | 86 | UBAC2 |
51 | 14 | 34820295 | 36440325 | 3 | 1 | 2.1e-08 | 3.7e-07 | 9.9e-02 | 90 | KIAA0391 |
52 | 14 | 92733536 | 93401178 | 1 | 1 | 5.6e-08 | 5.9e-07 | 5.4e-03 | 69 | RIN3 |
53 | 15 | 40778506 | 42749023 | 10 | 1 | 1.7e-12 | 2.7e-13 | 1.5e-03 | 81 | NDUFAF1 |
54 | 15 | 66662107 | 68492262 | 3 | 2 | 3.6e-28 | 9.2e-35 | 5.1e-07 | 83 | AAGAB SMAD3 |
55 | 15 | 90208219 | 91744509 | 2 | 1 | 4.3e-15 | 9.5e-13 | 2.7e-01 | 98 | IQGAP1 |
56 | 16 | 10325245 | 12138068 | 6 | 7 | 8.2e-32 | 1.8e-41 | NaN | NaN | CLEC16A DEXI RMI2 RP11-396B14.2 RP11-876N24.5 |
57 | 16 | 26526350 | 28065536 | 3 | 1 | 3.8e-10 | 3.2e-11 | 9.6e-11 | 5 | CTD-3203P2.1 |
58 | 17 | 36710513 | 39502398 | 23 | 3 | 1.3e-30 | 3.0e-28 | 1.0e+00 | 100 | CASC3 KRT222 ORMDL3 |
59 | 17 | 39993748 | 41393295 | 3 | 1 | 1.3e-08 | 2.0e-07 | 2.7e-02 | 82 | RP11-400F19.8 |
60 | 17 | 42628193 | 43570226 | 4 | 1 | 2.9e-10 | 1.4e-10 | 6.7e-02 | 92 | MGC57346 |
61 | 17 | 46668951 | 48347817 | 2 | 1 | 3.7e-14 | 4.7e-15 | 1.0e-02 | 89 | ZNF652 |
62 | 18 | 19692435 | 21303692 | 1 | 1 | 4.8e-08 | 1.5e-07 | 4.7e-01 | 98 | RBBP8 |
63 | 18 | 47706580 | 49306115 | 2 | 1 | 1.1e-08 | 3.1e-09 | 1.1e-01 | 93 | SMAD4 |
64 | 18 | 51100222 | 52540420 | 1 | 1 | 5.7e-09 | 2.1e-09 | 2.2e-05 | 50 | POLI |
65 | 19 | 2538668 | 3078394 | 2 | 1 | 1.4e-07 | 9.0e-07 | 8.8e-01 | 100 | ZNF554 |
66 | 19 | 16368528 | 16876099 | 1 | 1 | 2.6e-07 | 4.1e-07 | 3.9e-05 | 34 | C19orf44 |
67 | 20 | 51935779 | 52456445 | 1 | 1 | 1.7e-09 | 2.8e-13 | 1.7e-07 | 49 | ZNF217 |
68 | 20 | 61522825 | 62912463 | 9 | 1 | 1.6e-11 | 6.4e-11 | 2.4e-02 | 88 | STMN3 |
69 | 21 | 39849553 | 41383143 | 2 | 1 | 3.1e-08 | 2.9e-08 | 4.7e-06 | 32 | PSMG1 |
70 | 22 | 37063016 | 37586000 | 1 | 1 | 2.3e-07 | 1.9e-07 | 2.5e-01 | 95 | CSF2RB |
71 | 22 | 40789606 | 42917154 | 14 | 1 | 3.8e-11 | 9.0e-10 | 9.3e-01 | 100 | PHF5A |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 16 | 0.96 | 2.6 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 18 | 1.41 | 2.6 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 5 | 0.98 | 2.6 |
GTEx | Breast Mammary Tissue | 21 | 1.06 | 2.5 |
GTEx | Breast Mammary Tissue (Male) | 9 | 0.75 | 2.5 |
GTEx | Pancreas | 16 | 0.98 | 2.5 |
GTEx | Whole Blood | 18 | 0.90 | 2.5 |
NTR | Blood | 22 | 0.92 | 2.5 |
YFS | Blood | 43 | 0.93 | 2.5 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 16 | 0.78 | 2.5 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 28 | 1.12 | 2.5 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 20 | 1.19 | 2.5 |
GTEx | Brain Cortex | 7 | 0.68 | 2.4 |
GTEx | Brain Nucleus accumbens basal ganglia | 11 | 1.27 | 2.4 |
GTEx | Breast Mammary Tissue (Female) | 16 | 0.97 | 2.4 |
GTEx | Cells Transformed fibroblasts | 39 | 0.93 | 2.4 |
GTEx | Colon Transverse | 20 | 0.97 | 2.4 |
GTEx | Esophagus Mucosa | 27 | 0.81 | 2.4 |
GTEx | Skin Not Sun Exposed Suprapubic | 28 | 1.14 | 2.4 |
GTEx | Spleen | 13 | 0.92 | 2.4 |
GTEx | Testis | 28 | 0.89 | 2.4 |
GTEx | Thyroid | 34 | 0.85 | 2.4 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 14 | 0.85 | 2.4 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 19 | 0.92 | 2.4 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 23 | 0.84 | 2.4 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 30 | 0.73 | 2.4 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 7 | 0.63 | 2.4 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 22 | 0.75 | 2.4 |
The Cancer Genome Atlas | Thyroid Carcinoma | 42 | 0.81 | 2.4 |
GTEx | Adipose Visceral Omentum | 18 | 0.88 | 2.3 |
GTEx | Artery Tibial | 26 | 0.69 | 2.3 |
GTEx | Brain Cerebellar Hemisphere | 10 | 0.67 | 2.3 |
GTEx | Brain Cerebellum | 14 | 0.71 | 2.3 |
GTEx | Brain Frontal Cortex BA9 | 10 | 1.08 | 2.3 |
GTEx | Brain Hypothalamus | 8 | 1.36 | 2.3 |
GTEx | Brain Putamen basal ganglia | 7 | 1.12 | 2.3 |
GTEx | Colon Sigmoid | 10 | 0.68 | 2.3 |
GTEx | Esophagus Gastroesophageal Junction | 9 | 0.62 | 2.3 |
GTEx | Esophagus Muscularis | 25 | 0.77 | 2.3 |
GTEx | Heart Atrial Appendage | 9 | 0.57 | 2.3 |
GTEx | Skin Sun Exposed Lower leg | 32 | 0.88 | 2.3 |
GTEx | Uterus | 4 | 0.71 | 2.3 |
METSIM | Adipose | 36 | 0.78 | 2.3 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 37 | 0.84 | 2.3 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 9 | 0.88 | 2.3 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 13 | 0.82 | 2.3 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 7 | 1.01 | 2.3 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 5 | 0.93 | 2.3 |
GTEx | Adipose Subcutaneous | 21 | 0.60 | 2.2 |
GTEx | Artery Aorta | 23 | 0.77 | 2.2 |
GTEx | Liver | 5 | 0.70 | 2.2 |
GTEx | Lung | 18 | 0.63 | 2.2 |
GTEx | Muscle Skeletal | 19 | 0.66 | 2.2 |
GTEx | Nerve Tibial | 29 | 0.67 | 2.2 |
GTEx | Ovary | 7 | 0.77 | 2.2 |
GTEx | Pituitary | 11 | 0.99 | 2.2 |
GTEx | Prostate | 6 | 0.72 | 2.2 |
ROSMAP | Brain Pre-frontal Cortex | 23 | 0.52 | 2.2 |
CommonMind | Brain Pre-frontal Cortex | 41 | 0.76 | 2.2 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 7 | 0.64 | 2.2 |
The Cancer Genome Atlas | Esophageal Carcinoma | 5 | 0.73 | 2.2 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 27 | 0.63 | 2.2 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 6 | 0.45 | 2.2 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 39 | 0.84 | 2.2 |
GTEx | Adrenal Gland | 10 | 0.69 | 2.1 |
GTEx | Artery Coronary | 4 | 0.34 | 2.1 |
GTEx | Small Intestine Terminal Ileum | 1 | 0.22 | 2.1 |
GTEx | Stomach | 12 | 0.83 | 2.1 |
GTEx | Vagina | 4 | 0.63 | 2.1 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 4 | 0.37 | 2.1 |
GTEx | Brain Caudate basal ganglia | 5 | 0.54 | 2.0 |
GTEx | Cells EBV-transformed lymphocytes | 9 | 0.63 | 2.0 |
GTEx | Brain Hippocampus | 3 | 0.57 | 1.9 |
GTEx | Heart Left Ventricle | 8 | 0.52 | 1.9 |