Best TWAS P=1.31e-08 · Best GWAS P=1.06e-06 conditioned to 0.869
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | STMN3 | 0.02 | 0.02 | blup | 43 | 0.02 | 0.00174 | -4.8 | -5.2 | 1.7e-07 | 0.92 | 0.01 | 0.84 | FALSE |
| 2 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SLC2A4RG | 0.03 | 0.01 | blup | 48 | 0.02 | 0.00244 | -4.3 | 5.6 | 2.7e-08 | -0.80 | 0.01 | 0.75 | FALSE |
| 3 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | STMN3 | 0.07 | 0.01 | blup | 41 | 0.05 | 0.00042 | -4.7 | -5.7 | 1.3e-08 | 0.87 | 0.01 | 0.87 | TRUE |