691 significantly associated models · 157 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 7686056 | 11137778 | 6 | 2 | 1.9e-09 | 3.2e-09 | 1.8e-01 | 95 | KIF1B RERE |
2 | 1 | 151313774 | 152991060 | 3 | 6 | 1.4e-11 | 1.0e-12 | 1.0e+00 | 100 | FLG LINGO4 S100A11 |
3 | 1 | 166702558 | 168182443 | 1 | 1 | 5.0e-13 | 2.4e-13 | 1.0e+00 | 100 | CD247 |
4 | 1 | 172905751 | 173423799 | 1 | 1 | 6.9e-08 | 9.1e-08 | 1.0e+00 | 100 | TNFSF4 |
5 | 1 | 202317696 | 203743653 | 2 | 1 | 8.8e-10 | 1.4e-09 | 1.0e+00 | 100 | MYBPH |
6 | 2 | 99922967 | 100994580 | 1 | 1 | 2.5e-08 | 2.2e-08 | 7.3e-02 | 90 | AFF3 |
7 | 2 | 101994731 | 104027106 | 6 | 8 | 8.4e-62 | 5.1e-51 | NaN | NaN | IL18R1 IL1R1 IL1RL1 SLC9A2 |
8 | 2 | 241941773 | 243048760 | 8 | 3 | 3.2e-23 | 8.6e-24 | 3.2e-01 | 99 | D2HGDH ING5 |
9 | 3 | 127622736 | 128373556 | 1 | 1 | 4.1e-08 | 2.5e-07 | 4.0e-01 | 97 | EEFSEC |
10 | 4 | 38097478 | 39643536 | 4 | 1 | 2.7e-14 | 2.1e-15 | 3.7e-03 | 87 | TLR1 |
11 | 4 | 122377715 | 123976639 | 1 | 1 | 1.4e-17 | 1.1e-14 | 5.0e-03 | 87 | KIAA1109 |
12 | 5 | 35608310 | 36124514 | 1 | 1 | 1.2e-08 | 7.0e-09 | 1.0e+00 | 100 | IL7R |
13 | 5 | 109381583 | 111527482 | 5 | 8 | 2.8e-23 | 4.2e-38 | NaN | NaN | SLC25A46 TMEM232 TSLP WDR36 |
14 | 5 | 130588008 | 132900729 | 15 | 7 | 1.4e-23 | 7.4e-26 | NaN | NaN | AC034220.3 KIF3A P4HA2-AS1 SLC22A5 |
15 | 5 | 140789933 | 142230251 | 1 | 1 | 1.6e-09 | 1.1e-09 | 7.3e-03 | 81 | NDFIP1 |
16 | 5 | 156009720 | 157697754 | 2 | 1 | 4.0e-10 | 4.5e-09 | 1.9e-02 | 84 | ADAM19 |
17 | 6 | 25266147 | 26682323 | 1 | 2 | 1.8e-07 | 4.0e-09 | 2.2e-04 | 61 | TRIM38 |
18 | 6 | 34528785 | 35950210 | 2 | 1 | 2.4e-08 | 1.0e-09 | 6.6e-03 | 80 | ZNF76 |
19 | 6 | 63986735 | 64534000 | 1 | 1 | 1.7e-08 | 5.2e-09 | 5.9e-02 | 90 | PTP4A1 |
20 | 6 | 89941356 | 91704536 | 1 | 2 | 2.5e-16 | 2.0e-24 | 3.4e-06 | 79 | BACH2 |
21 | 6 | 134905567 | 136516257 | 2 | 2 | 5.6e-14 | 3.3e-09 | 7.7e-01 | 100 | AHI1 |
22 | 7 | 27623776 | 28468319 | 1 | 1 | 2.6e-07 | 2.2e-12 | 1.5e-06 | 53 | JAZF1 |
23 | 9 | 4934896 | 7345375 | 5 | 3 | 2.3e-28 | 1.1e-56 | 1.2e-22 | 62 | GLDC KIAA1432 RANBP6 |
24 | 10 | 74879374 | 76266883 | 1 | 1 | 1.5e-07 | 2.2e-05 | 2.1e-01 | 91 | RP11-574K11.5 |
25 | 10 | 93657148 | 95110026 | 1 | 1 | 7.5e-08 | 1.8e-08 | 1.4e-02 | 81 | KIF11 |
26 | 11 | 60839578 | 62346131 | 6 | 1 | 2.5e-10 | 3.3e-10 | 6.2e-02 | 91 | FADS1 |
27 | 11 | 64845438 | 66919278 | 5 | 2 | 5.3e-09 | 3.0e-10 | 5.9e-05 | 59 | CTD-3074O7.5 EFEMP2 |
28 | 11 | 75678647 | 77536441 | 2 | 1 | 1.4e-26 | 3.4e-45 | 1.4e-21 | 54 | LRRC32 |
29 | 11 | 110776537 | 112287801 | 1 | 1 | 1.3e-09 | 1.7e-10 | 1.0e+00 | 100 | SIK2 |
30 | 12 | 47407397 | 48825686 | 1 | 1 | 2.9e-07 | 6.0e-06 | 1.0e-02 | 68 | RP1-197B17.3 |
31 | 12 | 55601472 | 58677299 | 12 | 4 | 4.1e-16 | 2.8e-25 | 1.2e-03 | 90 | GPR182 KIF5A RPS26 STAT6 |
32 | 12 | 120502726 | 122037099 | 1 | 1 | 9.2e-09 | 8.4e-08 | 6.8e-02 | 88 | SPPL3 |
33 | 13 | 99047988 | 100728229 | 3 | 3 | 3.8e-14 | 2.2e-17 | 5.4e-02 | 95 | UBAC2 |
34 | 14 | 92733536 | 93401178 | 1 | 1 | 2.6e-09 | 1.6e-05 | 8.2e-02 | 84 | RIN3 |
35 | 15 | 66662107 | 68789191 | 4 | 4 | 3.6e-32 | 2.6e-37 | 3.5e-04 | 92 | IQCH SMAD3 |
36 | 16 | 10325245 | 12010444 | 5 | 2 | 1.1e-19 | 1.4e-26 | 1.7e-06 | 80 | CLEC16A RP11-396B14.2 |
37 | 16 | 26518263 | 28065536 | 5 | 2 | 2.4e-13 | 2.6e-12 | 9.1e-04 | 78 | CTD-3203P2.1 IL4R |
38 | 17 | 36710513 | 39068227 | 23 | 9 | 1.2e-49 | 3.6e-48 | 1.0e+00 | 100 | C17orf37 CASC3 GSDMA KRT222 MED24 ORMDL3 |
39 | 17 | 42624404 | 43570226 | 1 | 1 | 1.0e-08 | 1.1e-08 | 1.1e-02 | 80 | CTD-2020K17.3 |
40 | 17 | 46668951 | 48139500 | 2 | 1 | 1.5e-14 | 9.5e-16 | 6.0e-03 | 88 | ZNF652 |
41 | 19 | 15771809 | 17268784 | 1 | 1 | 3.0e-07 | 9.0e-06 | 3.4e-03 | 56 | EPS15L1 |
42 | 19 | 45585167 | 46994833 | 3 | 1 | 5.0e-09 | 5.0e-10 | 1.0e+00 | 100 | DMWD |
43 | 20 | 62024275 | 62614338 | 2 | 1 | 1.3e-08 | 1.1e-06 | 8.7e-01 | 100 | STMN3 |
44 | 22 | 41071659 | 42685537 | 5 | 1 | 6.4e-08 | 1.1e-07 | 4.1e-01 | 98 | PHF5A |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Whole Blood | 13 | 0.652 | 2.3 |
GTEx | Spleen | 10 | 0.709 | 2.2 |
NTR | Blood | 15 | 0.624 | 2.2 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 17 | 0.678 | 2.2 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 8 | 0.475 | 2.2 |
GTEx | Brain Nucleus accumbens basal ganglia | 6 | 0.694 | 2.1 |
GTEx | Brain Putamen basal ganglia | 4 | 0.641 | 2.1 |
GTEx | Breast Mammary Tissue (Male) | 6 | 0.503 | 2.1 |
GTEx | Cells Transformed fibroblasts | 23 | 0.548 | 2.1 |
GTEx | Colon Transverse | 10 | 0.484 | 2.1 |
GTEx | Heart Atrial Appendage | 7 | 0.443 | 2.1 |
GTEx | Pancreas | 8 | 0.490 | 2.1 |
GTEx | Skin Sun Exposed Lower leg | 18 | 0.495 | 2.1 |
GTEx | Thyroid | 19 | 0.475 | 2.1 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 19 | 0.464 | 2.1 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 5 | 0.452 | 2.1 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 13 | 0.442 | 2.1 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 9 | 0.542 | 2.1 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 5 | 0.724 | 2.1 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 7 | 0.547 | 2.1 |
The Cancer Genome Atlas | Thyroid Carcinoma | 28 | 0.543 | 2.1 |
GTEx | Adipose Visceral Omentum | 9 | 0.442 | 2.0 |
GTEx | Artery Aorta | 14 | 0.470 | 2.0 |
GTEx | Artery Tibial | 20 | 0.532 | 2.0 |
GTEx | Brain Cerebellar Hemisphere | 4 | 0.269 | 2.0 |
GTEx | Brain Cerebellum | 6 | 0.303 | 2.0 |
GTEx | Brain Cortex | 7 | 0.676 | 2.0 |
GTEx | Brain Frontal Cortex BA9 | 3 | 0.325 | 2.0 |
GTEx | Brain Hypothalamus | 2 | 0.339 | 2.0 |
GTEx | Breast Mammary Tissue | 10 | 0.507 | 2.0 |
GTEx | Colon Sigmoid | 5 | 0.342 | 2.0 |
GTEx | Esophagus Mucosa | 15 | 0.452 | 2.0 |
GTEx | Muscle Skeletal | 13 | 0.450 | 2.0 |
GTEx | Pituitary | 6 | 0.538 | 2.0 |
GTEx | Skin Not Sun Exposed Suprapubic | 17 | 0.691 | 2.0 |
YFS | Blood | 23 | 0.498 | 2.0 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 6 | 0.363 | 2.0 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 11 | 0.533 | 2.0 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 10 | 0.367 | 2.0 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 9 | 0.439 | 2.0 |
GTEx | Adipose Subcutaneous | 9 | 0.258 | 1.9 |
GTEx | Breast Mammary Tissue (Female) | 6 | 0.365 | 1.9 |
GTEx | Cells EBV-transformed lymphocytes | 6 | 0.422 | 1.9 |
GTEx | Esophagus Muscularis | 9 | 0.278 | 1.9 |
GTEx | Liver | 3 | 0.418 | 1.9 |
GTEx | Lung | 9 | 0.313 | 1.9 |
GTEx | Nerve Tibial | 15 | 0.347 | 1.9 |
GTEx | Ovary | 5 | 0.551 | 1.9 |
GTEx | Prostate | 5 | 0.599 | 1.9 |
GTEx | Testis | 15 | 0.475 | 1.9 |
METSIM | Adipose | 18 | 0.390 | 1.9 |
ROSMAP | Brain Pre-frontal Cortex | 20 | 0.455 | 1.9 |
CommonMind | Brain Pre-frontal Cortex | 22 | 0.409 | 1.9 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 21 | 0.477 | 1.9 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 6 | 0.587 | 1.9 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 16 | 0.372 | 1.9 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 3 | 0.226 | 1.9 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 17 | 0.368 | 1.9 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 2 | 0.374 | 1.9 |
GTEx | Adrenal Gland | 5 | 0.343 | 1.8 |
GTEx | Esophagus Gastroesophageal Junction | 5 | 0.346 | 1.8 |
GTEx | Heart Left Ventricle | 4 | 0.261 | 1.8 |
GTEx | Stomach | 5 | 0.344 | 1.8 |
GTEx | Uterus | 1 | 0.176 | 1.8 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 6 | 0.547 | 1.8 |
The Cancer Genome Atlas | Esophageal Carcinoma | 3 | 0.438 | 1.8 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 5 | 0.314 | 1.8 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 2 | 0.187 | 1.8 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 2 | 0.394 | 1.8 |
GTEx | Artery Coronary | 1 | 0.085 | 1.7 |
GTEx | Brain Caudate basal ganglia | 3 | 0.326 | 1.7 |
GTEx | Brain Hippocampus | 1 | 0.191 | 1.7 |
GTEx | Small Intestine Terminal Ileum | 1 | 0.217 | 1.7 |
GTEx | Vagina | 0 | 0.000 | 1.7 |