Best TWAS P=8.09e-09 · Best GWAS P=1.78e-08 conditioned to 0.402
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Aorta | OPRL1 | 0.27 | 0.19 | lasso | 4 | 0.17 | 1.4e-09 | -5.2 | -5.2 | 1.9e-07 | -0.80 | 0.01 | 0.99 | FALSE |
2 | GTEx | Artery Tibial | OPRL1 | 0.10 | 0.10 | lasso | 2 | 0.06 | 1.1e-05 | -5.2 | -5.4 | 7.1e-08 | -0.88 | 0.01 | 0.99 | FALSE |
3 | GTEx | Artery Tibial | RGS19 | 0.12 | 0.07 | lasso | 2 | 0.07 | 2.8e-06 | 5.4 | -5.4 | 8.0e-08 | -0.95 | 0.00 | 1.00 | FALSE |
4 | GTEx | Brain Cerebellar Hemisphere | OPRL1 | 0.27 | 0.14 | lasso | 7 | 0.17 | 4.4e-05 | -5.2 | -5.1 | 2.9e-07 | -0.77 | 0.02 | 0.82 | FALSE |
5 | GTEx | Brain Cerebellum | RGS19 | 0.28 | 0.22 | lasso | 4 | 0.18 | 7.2e-06 | -5.2 | -5.2 | 2.6e-07 | -0.81 | 0.01 | 0.95 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | RGS19 | 0.37 | 0.28 | lasso | 8 | 0.29 | 3.2e-22 | 5.4 | -5.7 | 1.5e-08 | -0.93 | 0.00 | 1.00 | FALSE |
7 | GTEx | Esophagus Mucosa | RGS19 | 0.43 | 0.28 | enet | 17 | 0.34 | 7.9e-24 | -5.2 | -5.4 | 6.1e-08 | -0.91 | 0.00 | 1.00 | FALSE |
8 | GTEx | Esophagus Muscularis | OPRL1 | 0.17 | 0.14 | lasso | 1 | 0.13 | 4.7e-08 | -5.2 | -5.2 | 1.8e-07 | -0.84 | 0.01 | 0.99 | FALSE |
9 | GTEx | Esophagus Muscularis | RGS19 | 0.22 | 0.10 | lasso | 4 | 0.10 | 1.6e-06 | -5.2 | -5.3 | 1.3e-07 | -0.80 | 0.01 | 0.99 | FALSE |
10 | GTEx | Nerve Tibial | OPRL1 | 0.20 | 0.15 | lasso | 3 | 0.14 | 3.3e-10 | -5.2 | -5.1 | 3.0e-07 | -0.82 | 0.01 | 0.99 | FALSE |
11 | GTEx | Pancreas | OPRL1 | 0.39 | 0.27 | lasso | 5 | 0.32 | 6.9e-14 | -5.2 | -5.5 | 3.7e-08 | -0.90 | 0.01 | 0.99 | FALSE |
12 | GTEx | Skin Not Sun Exposed Suprapubic | RGS19 | 0.51 | 0.28 | enet | 28 | 0.32 | 4.3e-18 | -5.2 | -5.1 | 3.0e-07 | -0.80 | 0.01 | 0.99 | FALSE |
13 | GTEx | Skin Sun Exposed Lower leg | OPRL1 | 0.14 | 0.10 | lasso | 6 | 0.11 | 4.4e-09 | 5.4 | -5.7 | 1.3e-08 | -0.93 | 0.00 | 1.00 | FALSE |
14 | GTEx | Skin Sun Exposed Lower leg | RGS19 | 0.42 | 0.26 | lasso | 6 | 0.33 | 4.6e-28 | -5.2 | -5.6 | 2.4e-08 | -0.95 | 0.00 | 1.00 | FALSE |
15 | GTEx | Stomach | RGS19 | 0.18 | 0.25 | lasso | 2 | 0.25 | 2.2e-12 | -5.2 | -5.2 | 1.6e-07 | -0.84 | 0.01 | 0.99 | FALSE |
16 | GTEx | Thyroid | RGS19 | 0.23 | 0.14 | enet | 11 | 0.19 | 3.3e-14 | 5.4 | -5.2 | 2.5e-07 | -0.92 | 0.00 | 1.00 | FALSE |
17 | GTEx | Vagina | RGS19 | 0.39 | 0.08 | lasso | 8 | 0.03 | 7.5e-02 | 5.4 | -5.5 | 3.1e-08 | -0.91 | 0.01 | 0.87 | FALSE |
18 | GTEx | Whole Blood | OPRL1 | 0.09 | 0.06 | enet | 8 | 0.07 | 4.3e-07 | 5.6 | 5.8 | 8.1e-09 | 0.92 | 0.00 | 1.00 | TRUE |
19 | ROSMAP | Brain Pre-frontal Cortex | C20orf201 | 0.10 | 0.09 | enet | 9 | 0.10 | 9.9e-13 | -4.4 | 5.4 | 6.2e-08 | 0.68 | 0.19 | 0.80 | FALSE |
20 | YFS | Blood | OPRL1 | 0.07 | 0.07 | lasso | 5 | 0.09 | 5.0e-27 | -5.2 | 5.5 | 4.1e-08 | 0.82 | 0.02 | 0.98 | FALSE |
21 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RGS19 | 0.06 | 0.06 | blup | 47 | 0.05 | 1.4e-06 | -5.2 | -5.2 | 2.1e-07 | -0.80 | 0.00 | 1.00 | FALSE |
22 | The Cancer Genome Atlas | Brain Lower Grade Glioma | OPRL1 | 0.03 | 0.02 | lasso | 1 | 0.01 | 3.5e-02 | -5.2 | -5.2 | 1.8e-07 | -0.84 | 0.01 | 0.91 | FALSE |
23 | The Cancer Genome Atlas | Prostate Adenocarcinoma | RGS19 | 0.07 | 0.05 | blup | 48 | 0.07 | 1.1e-07 | -4.4 | -5.3 | 1.1e-07 | -0.79 | 0.02 | 0.98 | FALSE |