165 significantly associated models · 68 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 15752716 | 17413769 | 3 | 1 | 3.6e-08 | 1.1e-07 | 4.6e-01 | 98 | C1orf89 |
2 | 1 | 26327671 | 27882335 | 3 | 1 | 1.8e-08 | 3.3e-06 | 5.3e-01 | 98 | PIGV |
3 | 1 | 62207254 | 63844736 | 3 | 1 | 8.2e-11 | 2.4e-10 | 3.8e-01 | 98 | DOCK7 |
4 | 1 | 108854166 | 110733794 | 6 | 1 | 4.4e-32 | 9.3e-32 | 1.0e+00 | 100 | PSRC1 |
5 | 2 | 20529948 | 21958745 | 1 | 1 | 2.1e-25 | 9.5e-26 | 1.0e+00 | 100 | APOB |
6 | 2 | 26883355 | 28414302 | 4 | 1 | 3.7e-14 | 7.1e-14 | 1.0e+00 | 100 | FNDC4 |
7 | 2 | 43791363 | 44307450 | 1 | 1 | 5.4e-08 | 1.9e-17 | 1.8e-12 | 31 | ABCG5 |
8 | 5 | 73969058 | 75594743 | 4 | 1 | 1.6e-14 | 1.5e-14 | 5.8e-02 | 94 | HMGCR |
9 | 6 | 160071844 | 161571560 | 2 | 2 | 3.2e-12 | 5.0e-15 | 1.5e-04 | 76 | SLC22A3 |
10 | 8 | 18003897 | 18505600 | 1 | 1 | 1.3e-07 | 1.6e-10 | 2.4e-04 | 67 | NAT2 |
11 | 8 | 19547307 | 20071503 | 1 | 1 | 3.2e-08 | 5.2e-09 | 2.4e-03 | 73 | LPL |
12 | 9 | 106846396 | 108380721 | 1 | 1 | 2.8e-07 | 3.1e-07 | 6.4e-02 | 87 | ABCA1 |
13 | 9 | 135883620 | 136399075 | 1 | 1 | 1.1e-09 | 1.3e-09 | 5.7e-03 | 79 | ABO |
14 | 11 | 63044593 | 64701030 | 2 | 2 | 1.6e-08 | 1.8e-07 | 1.0e+00 | 100 | COX8A VEGFB |
15 | 11 | 115953897 | 117800682 | 5 | 2 | 4.1e-25 | 2.2e-29 | 3.2e-01 | 99 | PAFAH1B2 ZNF259 |
16 | 13 | 46645740 | 48066565 | 1 | 1 | 1.9e-07 | 5.5e-08 | 1.0e+00 | 100 | ESD |
17 | 13 | 114052470 | 115106996 | 1 | 1 | 6.2e-08 | 2.7e-05 | 1.3e-01 | 87 | RASA3 |
18 | 16 | 71374298 | 72800567 | 3 | 1 | 7.9e-08 | 2.0e-07 | 1.0e+00 | 100 | TXNL4B |
19 | 17 | 27207120 | 28933576 | 5 | 1 | 1.8e-08 | 3.7e-08 | 2.6e-01 | 96 | GIT1 |
20 | 19 | 9982334 | 12196190 | 10 | 9 | 1.6e-15 | 1.4e-42 | 5.0e-07 | 86 | C19orf80 CDKN2D KANK2 RGL3 SMARCA4 SPC24 |
21 | 19 | 44649590 | 46098885 | 3 | 3 | 2.3e-13 | 2.1e-86 | 6.7e-65 | 25 | APOC2 PVRL2 TOMM40 |
22 | 19 | 48918157 | 49424381 | 1 | 1 | 1.5e-09 | 9.2e-07 | 2.9e-01 | 95 | NTN5 |
23 | 20 | 39567774 | 40229720 | 2 | 1 | 4.0e-08 | 1.9e-07 | 6.1e-02 | 87 | LPIN3 |
24 | 20 | 62008975 | 62912463 | 3 | 1 | 8.1e-09 | 1.8e-08 | 4.0e-01 | 98 | OPRL1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Liver | 2 | 0.279 | 1.8 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 4 | 0.362 | 1.8 |
GTEx | Brain Frontal Cortex BA9 | 1 | 0.108 | 1.6 |
GTEx | Prostate | 0 | 0.000 | 1.6 |
GTEx | Skin Sun Exposed Lower leg | 6 | 0.165 | 1.6 |
GTEx | Spleen | 2 | 0.142 | 1.6 |
GTEx | Stomach | 1 | 0.069 | 1.6 |
GTEx | Vagina | 1 | 0.157 | 1.6 |
GTEx | Whole Blood | 4 | 0.201 | 1.6 |
CommonMind | Brain Pre-frontal Cortex | 9 | 0.167 | 1.6 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 4 | 0.194 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 4 | 0.195 | 1.6 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 5 | 0.314 | 1.6 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.6 |
GTEx | Adipose Subcutaneous | 1 | 0.029 | 1.5 |
GTEx | Adipose Visceral Omentum | 2 | 0.098 | 1.5 |
GTEx | Adrenal Gland | 0 | 0.000 | 1.5 |
GTEx | Artery Aorta | 3 | 0.101 | 1.5 |
GTEx | Artery Coronary | 0 | 0.000 | 1.5 |
GTEx | Artery Tibial | 4 | 0.106 | 1.5 |
GTEx | Brain Cerebellar Hemisphere | 2 | 0.134 | 1.5 |
GTEx | Brain Cerebellum | 1 | 0.050 | 1.5 |
GTEx | Brain Cortex | 0 | 0.000 | 1.5 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.5 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.5 |
GTEx | Breast Mammary Tissue | 0 | 0.000 | 1.5 |
GTEx | Breast Mammary Tissue (Male) | 0 | 0.000 | 1.5 |
GTEx | Breast Mammary Tissue (Female) | 0 | 0.000 | 1.5 |
GTEx | Cells EBV-transformed lymphocytes | 0 | 0.000 | 1.5 |
GTEx | Colon Transverse | 0 | 0.000 | 1.5 |
GTEx | Esophagus Mucosa | 6 | 0.181 | 1.5 |
GTEx | Esophagus Muscularis | 5 | 0.155 | 1.5 |
GTEx | Heart Atrial Appendage | 0 | 0.000 | 1.5 |
GTEx | Lung | 0 | 0.000 | 1.5 |
GTEx | Muscle Skeletal | 1 | 0.035 | 1.5 |
GTEx | Ovary | 0 | 0.000 | 1.5 |
GTEx | Pituitary | 0 | 0.000 | 1.5 |
GTEx | Skin Not Sun Exposed Suprapubic | 3 | 0.122 | 1.5 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.5 |
GTEx | Thyroid | 6 | 0.150 | 1.5 |
NTR | Blood | 3 | 0.125 | 1.5 |
ROSMAP | Brain Pre-frontal Cortex | 8 | 0.182 | 1.5 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 2 | 0.182 | 1.5 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 2 | 0.196 | 1.5 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 2 | 0.073 | 1.5 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 8 | 0.195 | 1.5 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 6 | 0.139 | 1.5 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 4 | 0.136 | 1.5 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 3 | 0.178 | 1.5 |
The Cancer Genome Atlas | Thyroid Carcinoma | 9 | 0.174 | 1.5 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 1.4 |
GTEx | Brain Putamen basal ganglia | 0 | 0.000 | 1.4 |
GTEx | Cells Transformed fibroblasts | 6 | 0.143 | 1.4 |
GTEx | Colon Sigmoid | 1 | 0.068 | 1.4 |
GTEx | Esophagus Gastroesophageal Junction | 0 | 0.000 | 1.4 |
GTEx | Heart Left Ventricle | 0 | 0.000 | 1.4 |
GTEx | Nerve Tibial | 3 | 0.069 | 1.4 |
GTEx | Pancreas | 1 | 0.061 | 1.4 |
GTEx | Testis | 3 | 0.095 | 1.4 |
GTEx | Uterus | 0 | 0.000 | 1.4 |
METSIM | Adipose | 2 | 0.043 | 1.4 |
YFS | Blood | 6 | 0.130 | 1.4 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 4 | 0.091 | 1.4 |
The Cancer Genome Atlas | Esophageal Carcinoma | 1 | 0.146 | 1.4 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 1 | 0.040 | 1.4 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 3 | 0.181 | 1.4 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 1 | 0.075 | 1.4 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 6 | 0.130 | 1.4 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 1 | 0.145 | 1.4 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 1 | 0.094 | 1.4 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 0 | 0.000 | 1.4 |
GTEx | Brain Caudate basal ganglia | 1 | 0.109 | 1.3 |