Best TWAS P=7.73e-08 · Best GWAS P=8.19e-08 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Aorta | P4HA2 | 0.12 | 0.14 | lasso | 2 | 0.11 | 1.2e-06 | -5.2 | -5.2 | 1.5e-07 | 0.97 | 0.01 | 0.99 | FALSE |
2 | GTEx | Artery Aorta | P4HA2-AS1 | 0.08 | 0.03 | lasso | 3 | 0.01 | 6.6e-02 | -5.3 | -5.2 | 1.5e-07 | 0.99 | 0.02 | 0.95 | FALSE |
3 | GTEx | Artery Tibial | P4HA2 | 0.12 | 0.15 | lasso | 6 | 0.14 | 3.2e-11 | -5.4 | -5.3 | 1.0e-07 | 0.99 | 0.01 | 0.99 | FALSE |
4 | GTEx | Esophagus Mucosa | P4HA2 | 0.23 | 0.10 | lasso | 6 | 0.14 | 6.1e-10 | -5.2 | -5.2 | 1.5e-07 | 0.94 | 0.01 | 0.99 | FALSE |
5 | GTEx | Esophagus Mucosa | SLC22A5 | 0.16 | 0.16 | enet | 8 | 0.16 | 6.3e-11 | -5.2 | 5.4 | 7.7e-08 | -0.95 | 0.01 | 0.98 | TRUE |
6 | GTEx | Lung | SLC22A5 | 0.10 | 0.15 | enet | 11 | 0.13 | 3.4e-10 | -5.2 | 5.2 | 2.2e-07 | -0.94 | 0.02 | 0.98 | FALSE |
7 | GTEx | Skin Not Sun Exposed Suprapubic | PDLIM4 | 0.13 | 0.08 | lasso | 2 | 0.06 | 2.6e-04 | -5.2 | 5.2 | 2.2e-07 | -0.84 | 0.04 | 0.93 | FALSE |
8 | GTEx | Skin Sun Exposed Lower leg | PDLIM4 | 0.09 | 0.08 | lasso | 8 | 0.09 | 1.0e-07 | -5.2 | 5.2 | 2.3e-07 | -0.91 | 0.02 | 0.98 | FALSE |
9 | GTEx | Thyroid | P4HA2 | 0.08 | 0.07 | enet | 9 | 0.06 | 3.5e-05 | -5.4 | -5.2 | 1.9e-07 | 0.98 | 0.01 | 0.99 | FALSE |
10 | GTEx | Whole Blood | SLC22A5 | 0.09 | 0.12 | lasso | 2 | 0.10 | 1.7e-09 | -5.2 | 5.2 | 1.7e-07 | -0.90 | 0.01 | 0.99 | FALSE |
11 | METSIM | Adipose | SLC22A5 | 0.05 | 0.08 | lasso | 1 | 0.08 | 1.0e-11 | -5.2 | 5.2 | 1.7e-07 | -0.90 | 0.02 | 0.98 | FALSE |
12 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SLC22A4 | 0.05 | 0.01 | enet | 7 | 0.02 | 1.6e-05 | -5.2 | 5.4 | 7.7e-08 | -0.83 | 0.01 | 0.97 | FALSE |
13 | The Cancer Genome Atlas | Thyroid Carcinoma | P4HA2 | 0.21 | 0.35 | enet | 10 | 0.35 | 4.7e-35 | -5.2 | -5.2 | 1.9e-07 | 0.98 | 0.00 | 0.99 | FALSE |