TWAS
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Models
Genes
Traits
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Traits
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Medication: Blood pressure
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chr10:103,987,875-105,647,095
Best TWAS P=2.09e-08 · Best GWAS P=4.36e-09 conditioned to 0.0791
104M
104.2M
104.4M
104.6M
104.8M
105M
105.2M
105.4M
105.6M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
YFS
Blood
NT5C2
0.13
0.10
bslmm
382
0.11
7.3e-35
-5.7
-5.6
2.1e-08
0.94
0.01
0.99
TRUE
1
GTEx
Testis
NT5C2
0.20
0.03
lasso
8
0.08
2.8e-04
-4.9
-5.5
3.3e-08
0.86
0.05
0.90
FALSE
2
ROSMAP
Brain Pre-frontal Cortex
CNNM2
0.11
0.08
lasso
3
0.07
2.2e-09
-5.3
-5.3
1.2e-07
0.99
0.02
0.98
FALSE