Best TWAS P=1.09e-08 · Best GWAS P=1.09e-08 conditioned to 1
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Colon Transverse | ACE | 0.31 | 0.28 | lasso | 2 | 0.28 | 1.8e-13 | 5.7 | -5.5 | 4.4e-08 | -0.98 | 0 | 1.00 | FALSE |
| 2 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ACE | 0.02 | 0.01 | enet | 3 | 0.01 | 1.3e-03 | 4.9 | 5.5 | 3.7e-08 | 0.93 | 0 | 0.98 | FALSE |
| 3 | The Cancer Genome Atlas | Colon Adenocarcinoma | ACE | 0.34 | 0.22 | lasso | 5 | 0.22 | 6.5e-13 | 4.9 | -5.5 | 4.9e-08 | -0.94 | 0 | 1.00 | FALSE |
| 4 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | ACE | 0.16 | 0.08 | lasso | 2 | 0.07 | 5.8e-05 | 4.9 | -5.6 | 2.7e-08 | -0.96 | 0 | 0.99 | FALSE |
| 5 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | ACE | 0.13 | 0.14 | lasso | 1 | 0.10 | 6.6e-05 | 5.7 | -5.7 | 1.1e-08 | -1.00 | 0 | 1.00 | TRUE |
| 6 | The Cancer Genome Atlas | Rectum Adenocarcinoma | ACE | 0.16 | 0.14 | lasso | 6 | 0.13 | 5.1e-04 | 5.7 | -5.5 | 3.8e-08 | -0.95 | 0 | 0.87 | FALSE |