Best TWAS P=7.4e-09 · Best GWAS P=2.58e-10 conditioned to 0.00876
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | LSP1 | 0.12 | 0.08 | lasso | 5 | 0.10 | 5.0e-11 | -5.7 | -5.8 | 7.4e-09 | 0.87 | 0.00 | 1.00 | TRUE |
| 2 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | LSP1 | 0.07 | 0.03 | lasso | 4 | 0.03 | 2.4e-04 | 4.7 | -5.7 | 1.1e-08 | 0.63 | 0.09 | 0.23 | FALSE |