177 significantly associated models · 71 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 5611729 | 7460433 | 3 | 1 | 9.8e-09 | 1.8e-08 | 2.9e-01 | 96 | DNAJC11 |
2 | 1 | 11060075 | 12600396 | 3 | 1 | 1.3e-14 | 3.0e-13 | 2.4e-02 | 90 | CLCN6 |
3 | 1 | 112312154 | 113743567 | 3 | 2 | 5.6e-10 | 3.0e-13 | 1.5e-07 | 48 | CTTNBP2NL RHOC |
4 | 3 | 26563909 | 28211713 | 2 | 1 | 2.5e-14 | 6.9e-15 | 5.1e-02 | 94 | SLC4A7 |
5 | 3 | 47681881 | 49365269 | 5 | 1 | 1.3e-08 | 9.4e-08 | 1.0e+00 | 100 | ZNF589 |
6 | 4 | 80407869 | 82578407 | 2 | 2 | 2.9e-09 | 1.2e-36 | 8.9e-26 | 31 | C4orf22 PRDM8 |
7 | 4 | 103020804 | 104627833 | 4 | 1 | 4.0e-08 | 5.6e-08 | 1.0e+00 | 100 | CISD2 |
8 | 7 | 6502367 | 7988091 | 1 | 1 | 1.6e-07 | 2.2e-05 | 3.8e-01 | 96 | C1GALT1 |
9 | 10 | 60026425 | 60829144 | 1 | 1 | 7.6e-08 | 2.0e-06 | 2.9e-01 | 95 | BICC1 |
10 | 10 | 95379543 | 96818402 | 1 | 1 | 7.8e-08 | 7.2e-08 | 1.9e-02 | 81 | NOC3L |
11 | 10 | 115555541 | 116053000 | 1 | 1 | 7.5e-08 | 2.5e-06 | 6.1e-02 | 84 | ADRB1 |
12 | 11 | 1625363 | 2161858 | 1 | 1 | 7.4e-09 | 2.6e-10 | 8.8e-03 | 83 | LSP1 |
13 | 11 | 46543524 | 48783497 | 8 | 3 | 2.1e-09 | 7.2e-11 | 5.4e-03 | 82 | ACP2 AGBL2 NUP160 |
14 | 11 | 99859184 | 101559718 | 2 | 1 | 2.0e-17 | 9.3e-17 | 1.0e+00 | 100 | ARHGAP42 |
15 | 11 | 110721187 | 112287801 | 2 | 1 | 4.3e-09 | 2.7e-09 | 1.0e+00 | 100 | SIK2 |
16 | 12 | 89286081 | 90799212 | 2 | 2 | 8.3e-10 | 1.6e-12 | 6.6e-06 | 59 | ATP2B1 LOC338758 |
17 | 12 | 111154626 | 113517494 | 4 | 1 | 3.2e-12 | 1.4e-18 | 1.7e-08 | 59 | SH2B3 |
18 | 13 | 114302502 | 115106996 | 2 | 1 | 1.7e-07 | 3.7e-07 | 1.0e+00 | 100 | CDC16 |
19 | 15 | 74042497 | 75930199 | 8 | 1 | 3.7e-11 | 5.5e-11 | 1.0e+00 | 100 | CSK |
20 | 15 | 80743350 | 81292020 | 1 | 1 | 7.0e-09 | 5.5e-10 | 9.9e-03 | 83 | FAM108C1 |
21 | 15 | 90712555 | 92135418 | 2 | 1 | 2.1e-21 | 6.8e-17 | 9.5e-01 | 100 | FES |
22 | 16 | 89462678 | 89961957 | 1 | 1 | 2.1e-07 | 4.3e-06 | 8.6e-01 | 100 | CHMP1A |
23 | 17 | 46258510 | 47718188 | 4 | 2 | 6.4e-09 | 3.4e-12 | 1.0e-05 | 60 | SNF8 ZNF652 |
24 | 17 | 60858059 | 62259376 | 2 | 1 | 1.9e-10 | 7.4e-10 | 1.0e+00 | 100 | ACE |
25 | 20 | 7419920 | 9648826 | 1 | 2 | 6.4e-10 | 3.0e-19 | 2.2e-07 | 67 | PLCB1 |
26 | 20 | 30083621 | 31469577 | 1 | 1 | 2.9e-09 | 1.4e-07 | 1.1e-05 | 30 | TSPY26P |
27 | 20 | 57525478 | 58079512 | 1 | 1 | 2.9e-08 | 9.5e-13 | 4.7e-06 | 59 | ZNF831 |
28 | 21 | 44251223 | 45879403 | 2 | 1 | 2.3e-09 | 1.0e-08 | 1.2e-01 | 92 | HSF2BP |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Adrenal Gland | 2 | 0.137 | 1.9 |
GTEx | Artery Aorta | 6 | 0.202 | 1.9 |
GTEx | Artery Tibial | 6 | 0.160 | 1.9 |
GTEx | Breast Mammary Tissue (Female) | 3 | 0.182 | 1.9 |
GTEx | Cells Transformed fibroblasts | 9 | 0.214 | 1.9 |
GTEx | Esophagus Gastroesophageal Junction | 2 | 0.138 | 1.9 |
GTEx | Lung | 2 | 0.070 | 1.9 |
GTEx | Muscle Skeletal | 5 | 0.173 | 1.9 |
GTEx | Ovary | 2 | 0.220 | 1.9 |
GTEx | Prostate | 0 | 0.000 | 1.9 |
GTEx | Skin Not Sun Exposed Suprapubic | 3 | 0.122 | 1.9 |
GTEx | Stomach | 1 | 0.069 | 1.9 |
GTEx | Vagina | 2 | 0.315 | 1.9 |
ROSMAP | Brain Pre-frontal Cortex | 4 | 0.091 | 1.9 |
GTEx | Adipose Subcutaneous | 4 | 0.115 | 1.8 |
GTEx | Adipose Visceral Omentum | 3 | 0.147 | 1.8 |
GTEx | Artery Coronary | 0 | 0.000 | 1.8 |
GTEx | Brain Cerebellum | 2 | 0.101 | 1.8 |
GTEx | Brain Cortex | 0 | 0.000 | 1.8 |
GTEx | Brain Frontal Cortex BA9 | 1 | 0.108 | 1.8 |
GTEx | Brain Hippocampus | 1 | 0.191 | 1.8 |
GTEx | Breast Mammary Tissue | 3 | 0.152 | 1.8 |
GTEx | Breast Mammary Tissue (Male) | 1 | 0.084 | 1.8 |
GTEx | Colon Sigmoid | 2 | 0.137 | 1.8 |
GTEx | Colon Transverse | 1 | 0.048 | 1.8 |
GTEx | Esophagus Mucosa | 4 | 0.120 | 1.8 |
GTEx | Esophagus Muscularis | 2 | 0.062 | 1.8 |
GTEx | Heart Atrial Appendage | 0 | 0.000 | 1.8 |
GTEx | Heart Left Ventricle | 1 | 0.065 | 1.8 |
GTEx | Nerve Tibial | 1 | 0.023 | 1.8 |
GTEx | Pancreas | 2 | 0.123 | 1.8 |
GTEx | Skin Sun Exposed Lower leg | 2 | 0.055 | 1.8 |
GTEx | Spleen | 1 | 0.071 | 1.8 |
GTEx | Testis | 3 | 0.095 | 1.8 |
GTEx | Thyroid | 4 | 0.100 | 1.8 |
GTEx | Uterus | 2 | 0.353 | 1.8 |
GTEx | Whole Blood | 1 | 0.050 | 1.8 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 3 | 0.145 | 1.8 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 6 | 0.146 | 1.8 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 4 | 0.136 | 1.8 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 3 | 0.120 | 1.8 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 3 | 0.181 | 1.8 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.8 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.187 | 1.8 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 2 | 0.119 | 1.8 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.8 |
GTEx | Brain Caudate basal ganglia | 1 | 0.109 | 1.7 |
GTEx | Brain Cerebellar Hemisphere | 0 | 0.000 | 1.7 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.7 |
GTEx | Brain Putamen basal ganglia | 1 | 0.160 | 1.7 |
GTEx | Cells EBV-transformed lymphocytes | 4 | 0.281 | 1.7 |
GTEx | Pituitary | 1 | 0.090 | 1.7 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.7 |
METSIM | Adipose | 4 | 0.087 | 1.7 |
NTR | Blood | 3 | 0.125 | 1.7 |
YFS | Blood | 5 | 0.108 | 1.7 |
CommonMind | Brain Pre-frontal Cortex | 8 | 0.149 | 1.7 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 8 | 0.182 | 1.7 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 2 | 0.182 | 1.7 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 1 | 0.098 | 1.7 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 3 | 0.110 | 1.7 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 3 | 0.146 | 1.7 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 3 | 0.070 | 1.7 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 1 | 0.090 | 1.7 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 3 | 0.188 | 1.7 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 2 | 0.151 | 1.7 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 1 | 0.078 | 1.7 |
The Cancer Genome Atlas | Thyroid Carcinoma | 6 | 0.116 | 1.7 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 1.6 |
GTEx | Liver | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 1 | 0.060 | 1.6 |
The Cancer Genome Atlas | Esophageal Carcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 5 | 0.108 | 1.6 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 1 | 0.145 | 1.6 |