Best TWAS P=6.58e-08 · Best GWAS P=5.08e-12 conditioned to 4.55e-05
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ABCG2 | 0.04 | 0.02 | blup | 100 | 0.04 | 1.8e-05 | -3.8 | -5.3 | 1.4e-07 | 0.53 | 0.23 | 0.49 | TRUE |
| 2 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | PPM1K | 0.08 | 0.03 | blup | 57 | 0.05 | 2.8e-03 | 5.5 | 5.4 | 6.6e-08 | -0.13 | 0.01 | 0.97 | TRUE |