TWAS
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Traits
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Cardiovascular Disease
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chr1:5,634,851-7,460,433
Best TWAS P=9.31e-11 · Best GWAS P=3.85e-07 conditioned to 0.0593
6M
6.5M
7M
7.5M
0
2
4
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
CommonMind
Brain Pre-frontal Cortex
TNFRSF25
0.09
0.03
enet
22
0.06
1.1e-07
3.2
6.5
9.3e-11
0.54
0.08
0.82
TRUE
1
CommonMind
Brain Pre-frontal Cortex
DNAJC11
0.03
0.03
lasso
5
0.04
3.1e-05
5.1
5.8
5.2e-09
0.89
0.03
0.95
FALSE
4
GTEx
Testis
THAP3
0.22
0.19
lasso
5
0.22
3.1e-10
4.9
5.7
1.5e-08
0.89
0.03
0.96
FALSE
5
The Cancer Genome Atlas
Brain Lower Grade Glioma
DNAJC11
0.02
0.00
blup
74
0.01
9.1e-03
4.9
5.4
7.6e-08
0.90
0.02
0.61
FALSE
3
GTEx
Skin Not Sun Exposed Suprapubic
ACOT7
0.12
0.01
lasso
8
0.01
4.9e-02
3.9
5.2
1.8e-07
0.32
0.07
0.48
FALSE