TWAS
hub
About
Usage
Models
Genes
Traits
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Traits
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Cardiovascular Disease
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chr9:18,674,055-20,075,536
Best TWAS P=2.52e-09 · Best GWAS P=1.39e-08 conditioned to 1
18.6M
18.8M
19M
19.2M
19.4M
19.6M
19.8M
20M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
ROSMAP
Brain Pre-frontal Cortex
RPS6
0.11
0.08
lasso
5
0.07
8.0e-10
5.7
-6.0
2.5e-09
-0.98
0.00
1.00
TRUE
1
GTEx
Cells Transformed fibroblasts
RP11-513M16.8
0.23
0.14
lasso
4
0.13
1.1e-09
5.6
5.5
3.8e-08
0.99
0.00
1.00
FALSE
3
GTEx
Stomach
RP11-513M16.7
0.20
0.10
lasso
4
0.09
6.2e-05
4.8
5.1
2.7e-07
0.94
0.04
0.95
FALSE
2
GTEx
Colon Transverse
RPS6
0.13
0.04
lasso
2
0.01
8.6e-02
5.4
-5.1
2.8e-07
-0.86
0.03
0.86
FALSE