Best TWAS P=8.71e-90 · Best GWAS P=2.67e-70 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DNLZ | 0.49 | 0.24 | enet | 35 | 0.34 | 4.7e-43 | -4.1 | -7.0 | 1.9e-12 | -0.04 | 1.00 | 0.00 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | INPP5E | 0.18 | 0.14 | enet | 21 | 0.21 | 1.6e-24 | 12.3 | -11.7 | 2.2e-31 | -0.03 | 1.00 | 0.00 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | QSOX2 | 0.18 | 0.11 | lasso | 4 | 0.10 | 1.0e-12 | 17.7 | 20.1 | 8.7e-90 | 0.94 | 0.00 | 1.00 | TRUE |
4 | CommonMind | Brain Pre-frontal Cortex | SNAPC4 | 0.06 | 0.04 | lasso | 2 | 0.05 | 9.0e-07 | 8.3 | -8.4 | 4.8e-17 | 0.01 | 0.96 | 0.00 | FALSE |
5 | CommonMind | Brain Pre-frontal Cortex | SNHG7 | 0.61 | 0.45 | bslmm | 381 | 0.47 | 2.1e-64 | -9.2 | 9.7 | 3.7e-22 | 0.07 | 1.00 | 0.00 | FALSE |
6 | GTEx | Adipose Subcutaneous | SDCCAG3 | 0.13 | 0.00 | enet | 21 | 0.04 | 4.8e-04 | 9.3 | -5.4 | 5.5e-08 | 0.00 | 0.20 | 0.03 | FALSE |
7 | GTEx | Adipose Subcutaneous | DNLZ | 0.61 | 0.40 | lasso | 9 | 0.46 | 3.7e-41 | -4.1 | -5.7 | 1.4e-08 | -0.02 | 1.00 | 0.00 | TRUE |
8 | GTEx | Adipose Subcutaneous | SNHG7 | 0.42 | 0.30 | lasso | 3 | 0.30 | 3.8e-25 | -9.2 | 9.2 | 4.1e-20 | 0.03 | 1.00 | 0.00 | FALSE |
9 | GTEx | Adrenal Gland | INPP5E | 0.18 | 0.02 | enet | 23 | 0.10 | 2.2e-04 | 9.3 | -12.2 | 4.4e-34 | -0.18 | 0.21 | 0.10 | FALSE |
10 | GTEx | Artery Aorta | SNHG7 | 0.37 | 0.26 | lasso | 3 | 0.33 | 8.2e-19 | -9.2 | 8.6 | 8.6e-18 | 0.02 | 1.00 | 0.00 | FALSE |
11 | GTEx | Artery Tibial | SDCCAG3 | 0.05 | 0.00 | lasso | 4 | 0.00 | 2.2e-01 | -7.4 | -9.7 | 2.2e-22 | 0.04 | 0.30 | 0.04 | FALSE |
12 | GTEx | Artery Tibial | SNHG7 | 0.28 | 0.26 | enet | 5 | 0.26 | 2.2e-20 | -9.2 | 9.2 | 5.2e-20 | 0.03 | 1.00 | 0.00 | FALSE |
13 | GTEx | Brain Caudate basal ganglia | INPP5E | 0.23 | 0.20 | enet | 8 | 0.22 | 7.2e-07 | 10.2 | -9.8 | 1.3e-22 | -0.02 | 0.61 | 0.02 | FALSE |
14 | GTEx | Brain Caudate basal ganglia | SNHG7 | 0.37 | 0.10 | lasso | 6 | 0.27 | 2.5e-08 | -9.2 | 15.0 | 1.1e-50 | 0.05 | 0.17 | 0.05 | TRUE |
15 | GTEx | Brain Cerebellar Hemisphere | INPP5E | 0.25 | 0.23 | enet | 6 | 0.17 | 3.4e-05 | 9.9 | -10.7 | 7.0e-27 | -0.02 | 0.68 | 0.02 | FALSE |
16 | GTEx | Brain Cerebellar Hemisphere | GPSM1 | 0.26 | 0.07 | lasso | 4 | 0.11 | 9.6e-04 | 4.9 | -10.4 | 2.6e-25 | 0.00 | 0.13 | 0.05 | FALSE |
17 | GTEx | Brain Cerebellum | INPP5E | 0.40 | 0.30 | enet | 20 | 0.29 | 3.6e-09 | 10.2 | -10.0 | 1.9e-23 | -0.01 | 1.00 | 0.00 | FALSE |
18 | GTEx | Brain Cerebellum | SEC16A | 0.40 | 0.02 | enet | 22 | 0.03 | 6.0e-02 | -1.5 | 5.2 | 2.1e-07 | 0.11 | 0.06 | 0.05 | FALSE |
19 | GTEx | Brain Frontal Cortex BA9 | DNLZ | 0.47 | 0.31 | lasso | 3 | 0.31 | 4.9e-09 | -4.1 | -5.5 | 2.9e-08 | -0.01 | 0.84 | 0.01 | FALSE |
20 | GTEx | Brain Putamen basal ganglia | INPP5E | 0.28 | 0.20 | enet | 6 | 0.01 | 2.2e-01 | 8.2 | -7.5 | 7.0e-14 | 0.01 | 0.32 | 0.05 | FALSE |
21 | GTEx | Cells EBV-transformed lymphocytes | INPP5E | 0.27 | 0.05 | enet | 21 | 0.14 | 2.0e-05 | 9.9 | -7.2 | 8.5e-13 | -0.05 | 0.15 | 0.05 | FALSE |
22 | GTEx | Cells EBV-transformed lymphocytes | DNLZ | 0.65 | 0.26 | enet | 63 | 0.19 | 9.0e-07 | -4.1 | -5.5 | 3.6e-08 | -0.02 | 0.81 | 0.01 | FALSE |
23 | GTEx | Cells Transformed fibroblasts | QSOX2 | 0.40 | 0.25 | enet | 11 | 0.30 | 5.2e-23 | -16.7 | 20.0 | 2.4e-89 | 0.74 | 1.00 | 0.00 | FALSE |
24 | GTEx | Cells Transformed fibroblasts | SDCCAG3 | 0.12 | 0.03 | enet | 21 | 0.06 | 5.4e-05 | 9.3 | -9.5 | 2.1e-21 | -0.03 | 0.98 | 0.00 | FALSE |
25 | GTEx | Cells Transformed fibroblasts | CARD9 | 0.10 | 0.01 | enet | 15 | 0.02 | 8.0e-03 | -4.7 | -11.4 | 4.6e-30 | 0.07 | 0.36 | 0.02 | FALSE |
26 | GTEx | Cells Transformed fibroblasts | SNHG7 | 0.52 | 0.42 | lasso | 2 | 0.42 | 3.9e-34 | -9.2 | 9.3 | 1.9e-20 | 0.03 | 1.00 | 0.00 | FALSE |
27 | GTEx | Colon Sigmoid | INPP5E | 0.22 | 0.10 | lasso | 3 | 0.01 | 1.6e-01 | 8.6 | -8.8 | 1.7e-18 | 0.04 | 0.55 | 0.02 | FALSE |
28 | GTEx | Colon Sigmoid | DNLZ | 0.45 | 0.42 | lasso | 2 | 0.42 | 1.8e-16 | -4.1 | -5.2 | 1.5e-07 | -0.01 | 1.00 | 0.00 | FALSE |
29 | GTEx | Colon Transverse | ABCA2 | 0.34 | 0.29 | lasso | 3 | 0.30 | 7.2e-15 | -5.3 | 5.5 | 4.3e-08 | 0.10 | 1.00 | 0.00 | FALSE |
30 | GTEx | Colon Transverse | SEC16A | 0.13 | 0.04 | lasso | 4 | 0.05 | 2.5e-03 | 10.3 | -6.7 | 2.8e-11 | -0.04 | 0.16 | 0.06 | FALSE |
31 | GTEx | Colon Transverse | SDCCAG3 | 0.11 | 0.01 | lasso | 8 | 0.02 | 5.5e-02 | 9.3 | -8.4 | 3.4e-17 | -0.05 | 0.24 | 0.03 | TRUE |
32 | GTEx | Colon Transverse | RABL6 | 0.26 | 0.16 | lasso | 3 | 0.12 | 2.7e-06 | -5.3 | 5.5 | 4.3e-08 | 0.10 | 0.89 | 0.01 | FALSE |
33 | GTEx | Colon Transverse | KIAA1984 | 0.23 | 0.03 | lasso | 6 | 0.06 | 8.2e-04 | -5.3 | 5.3 | 1.3e-07 | 0.10 | 0.38 | 0.04 | FALSE |
34 | GTEx | Colon Transverse | DNLZ | 0.71 | 0.48 | lasso | 8 | 0.51 | 7.4e-28 | -4.1 | -5.3 | 1.1e-07 | -0.01 | 1.00 | 0.00 | FALSE |
35 | GTEx | Colon Transverse | SNHG7 | 0.18 | 0.14 | lasso | 6 | 0.13 | 7.6e-07 | -9.2 | 9.3 | 1.1e-20 | 0.04 | 0.41 | 0.04 | FALSE |
36 | GTEx | Esophagus Gastroesophageal Junction | SNHG7 | 0.38 | 0.37 | lasso | 5 | 0.35 | 1.7e-13 | -9.2 | 9.0 | 1.9e-19 | 0.03 | 1.00 | 0.00 | FALSE |
37 | GTEx | Esophagus Mucosa | INPP5E | 0.11 | 0.12 | lasso | 3 | 0.12 | 1.0e-08 | 9.9 | -10.3 | 1.1e-24 | -0.01 | 1.00 | 0.00 | FALSE |
38 | GTEx | Esophagus Mucosa | DNLZ | 0.69 | 0.55 | enet | 46 | 0.58 | 4.7e-47 | -4.1 | -5.7 | 1.4e-08 | -0.03 | 1.00 | 0.00 | FALSE |
39 | GTEx | Esophagus Muscularis | QSOX2 | 0.16 | 0.07 | lasso | 4 | 0.06 | 1.4e-04 | 17.5 | 15.8 | 2.2e-56 | 0.93 | 0.00 | 0.99 | FALSE |
40 | GTEx | Esophagus Muscularis | SDCCAG3 | 0.10 | 0.02 | enet | 5 | 0.02 | 3.6e-02 | 7.8 | -10.7 | 9.3e-27 | -0.04 | 0.26 | 0.03 | FALSE |
41 | GTEx | Esophagus Muscularis | SNHG7 | 0.29 | 0.33 | lasso | 1 | 0.33 | 1.1e-20 | -9.2 | 9.2 | 2.5e-20 | 0.03 | 1.00 | 0.00 | FALSE |
42 | GTEx | Heart Atrial Appendage | INPP5E | 0.13 | 0.12 | lasso | 2 | 0.10 | 3.5e-05 | 10.3 | -10.3 | 7.0e-25 | -0.03 | 0.32 | 0.03 | FALSE |
43 | GTEx | Heart Atrial Appendage | DNLZ | 0.55 | 0.39 | lasso | 6 | 0.37 | 1.1e-17 | -4.1 | -5.3 | 1.1e-07 | -0.01 | 1.00 | 0.00 | FALSE |
44 | GTEx | Heart Atrial Appendage | RP11-83N9.5 | 0.18 | 0.00 | enet | 11 | 0.00 | 2.2e-01 | 1.8 | 5.2 | 1.7e-07 | 0.05 | 0.04 | 0.04 | FALSE |
45 | GTEx | Liver | PMPCA | 0.31 | 0.00 | lasso | 5 | 0.06 | 8.9e-03 | 1.4 | 5.5 | 4.3e-08 | -0.04 | 0.09 | 0.05 | FALSE |
46 | GTEx | Lung | INPP5E | 0.10 | 0.05 | enet | 13 | 0.04 | 6.1e-04 | 10.2 | -9.0 | 2.5e-19 | -0.02 | 0.76 | 0.01 | FALSE |
47 | GTEx | Lung | CARD9 | 0.08 | 0.04 | enet | 6 | 0.04 | 2.5e-04 | 9.7 | 10.1 | 3.6e-24 | -0.01 | 0.89 | 0.00 | FALSE |
48 | GTEx | Lung | DNLZ | 0.53 | 0.31 | enet | 51 | 0.35 | 1.3e-27 | -4.1 | -5.5 | 4.3e-08 | -0.06 | 1.00 | 0.00 | FALSE |
49 | GTEx | Lung | RP11-611D20.2 | 0.21 | 0.22 | lasso | 2 | 0.21 | 8.7e-16 | -5.5 | -5.5 | 4.7e-08 | -0.05 | 1.00 | 0.00 | TRUE |
50 | GTEx | Muscle Skeletal | CARD9 | 0.16 | 0.12 | enet | 28 | 0.11 | 9.0e-11 | -4.7 | -5.8 | 5.3e-09 | 0.08 | 1.00 | 0.00 | FALSE |
51 | GTEx | Muscle Skeletal | SNHG7 | 0.18 | 0.18 | lasso | 2 | 0.18 | 6.3e-17 | -9.2 | 9.2 | 3.6e-20 | 0.03 | 1.00 | 0.00 | FALSE |
52 | GTEx | Nerve Tibial | INPP5E | 0.13 | 0.17 | enet | 10 | 0.14 | 3.7e-10 | 10.0 | -10.1 | 3.4e-24 | -0.01 | 1.00 | 0.00 | FALSE |
53 | GTEx | Nerve Tibial | QSOX2 | 0.22 | 0.12 | enet | 12 | 0.17 | 4.6e-12 | 15.8 | 16.5 | 5.2e-61 | 0.91 | 0.06 | 0.94 | FALSE |
54 | GTEx | Ovary | INPP5E | 0.24 | 0.13 | enet | 11 | 0.15 | 1.9e-04 | 8.7 | -9.9 | 4.3e-23 | 0.00 | 0.16 | 0.05 | FALSE |
55 | GTEx | Ovary | SEC16A | 0.33 | 0.06 | enet | 10 | 0.14 | 3.4e-04 | 8.2 | -15.4 | 9.4e-54 | -0.22 | 0.06 | 0.07 | FALSE |
56 | GTEx | Pancreas | SEC16A | 0.28 | 0.10 | enet | 16 | 0.16 | 4.1e-07 | 10.3 | -10.6 | 2.3e-26 | 0.07 | 0.90 | 0.00 | FALSE |
57 | GTEx | Pancreas | SDCCAG3 | 0.21 | 0.03 | lasso | 4 | 0.01 | 9.5e-02 | 6.7 | -5.2 | 1.8e-07 | -0.02 | 0.10 | 0.06 | FALSE |
58 | GTEx | Pituitary | INPP5E | 0.21 | 0.24 | lasso | 3 | 0.14 | 1.8e-04 | 10.2 | 9.8 | 1.1e-22 | 0.05 | 0.28 | 0.04 | FALSE |
59 | GTEx | Prostate | SNHG7 | 0.40 | -0.01 | enet | 17 | 0.10 | 2.3e-03 | -9.2 | 8.5 | 2.2e-17 | 0.09 | 0.10 | 0.05 | FALSE |
60 | GTEx | Skin Sun Exposed Lower leg | INPP5E | 0.10 | 0.10 | lasso | 2 | 0.09 | 5.2e-08 | 9.9 | -9.4 | 3.7e-21 | -0.01 | 1.00 | 0.00 | FALSE |
61 | GTEx | Skin Sun Exposed Lower leg | SDCCAG3 | 0.16 | 0.08 | lasso | 4 | 0.07 | 1.0e-06 | 6.7 | -6.3 | 2.7e-10 | -0.01 | 0.76 | 0.01 | FALSE |
62 | GTEx | Skin Sun Exposed Lower leg | SNHG7 | 0.34 | 0.21 | lasso | 5 | 0.26 | 9.0e-22 | -9.2 | 8.7 | 3.2e-18 | 0.02 | 1.00 | 0.00 | FALSE |
63 | GTEx | Spleen | PMPCA | 0.24 | 0.15 | lasso | 2 | 0.10 | 1.7e-03 | 8.3 | 8.8 | 1.7e-18 | -0.02 | 0.07 | 0.06 | FALSE |
64 | GTEx | Stomach | SEC16A | 0.15 | 0.09 | lasso | 4 | 0.10 | 1.8e-05 | 10.3 | -10.8 | 3.9e-27 | -0.02 | 0.85 | 0.01 | FALSE |
65 | GTEx | Stomach | SDCCAG3 | 0.24 | 0.07 | lasso | 4 | 0.05 | 1.9e-03 | -10.0 | -9.8 | 1.9e-22 | 0.02 | 0.21 | 0.04 | TRUE |
66 | GTEx | Stomach | SNHG7 | 0.20 | 0.13 | enet | 14 | 0.08 | 1.0e-04 | -9.2 | 9.4 | 3.9e-21 | 0.04 | 0.70 | 0.01 | FALSE |
67 | GTEx | Testis | INPP5E | 0.24 | 0.32 | enet | 10 | 0.30 | 5.4e-14 | 10.0 | -9.5 | 2.2e-21 | -0.02 | 1.00 | 0.00 | FALSE |
68 | GTEx | Testis | SDCCAG3 | 0.15 | 0.09 | lasso | 4 | 0.13 | 3.3e-06 | 9.3 | -11.1 | 1.7e-28 | -0.01 | 0.73 | 0.05 | TRUE |
69 | GTEx | Testis | SSNA1 | 0.18 | 0.17 | lasso | 7 | 0.16 | 1.4e-07 | -5.4 | 5.3 | 1.2e-07 | 0.09 | 0.95 | 0.00 | TRUE |
70 | GTEx | Testis | DNLZ | 0.45 | 0.29 | lasso | 5 | 0.31 | 2.8e-14 | -4.1 | -5.3 | 1.1e-07 | -0.01 | 1.00 | 0.00 | FALSE |
71 | GTEx | Testis | SNHG7 | 0.40 | 0.42 | lasso | 2 | 0.41 | 2.0e-19 | -9.2 | 9.2 | 3.6e-20 | 0.03 | 1.00 | 0.00 | FALSE |
72 | GTEx | Thyroid | INPP5E | 0.23 | 0.35 | enet | 16 | 0.37 | 8.2e-30 | 8.2 | -10.5 | 8.4e-26 | 0.00 | 1.00 | 0.00 | FALSE |
73 | GTEx | Thyroid | PMPCA | 0.10 | 0.05 | enet | 11 | 0.10 | 8.7e-08 | 9.5 | -8.0 | 1.6e-15 | 0.06 | 0.95 | 0.00 | FALSE |
74 | GTEx | Thyroid | SDCCAG3 | 0.16 | 0.11 | lasso | 3 | 0.12 | 9.4e-10 | 9.3 | -8.2 | 3.5e-16 | -0.01 | 1.00 | 0.00 | FALSE |
75 | GTEx | Thyroid | SNHG7 | 0.20 | 0.22 | lasso | 1 | 0.21 | 4.1e-16 | -9.2 | 9.2 | 2.5e-20 | 0.03 | 1.00 | 0.00 | FALSE |
76 | GTEx | Uterus | INPP5E | 0.60 | 0.04 | enet | 10 | 0.22 | 3.4e-05 | 10.7 | -8.8 | 1.2e-18 | 0.01 | 0.10 | 0.07 | FALSE |
77 | GTEx | Whole Blood | SEC16A | 0.07 | 0.05 | lasso | 5 | 0.04 | 1.3e-04 | 10.3 | -10.8 | 3.0e-27 | -0.02 | 0.94 | 0.00 | FALSE |
78 | GTEx | Whole Blood | SDCCAG3 | 0.07 | 0.03 | enet | 6 | 0.02 | 3.4e-03 | 9.5 | -10.3 | 8.4e-25 | 0.01 | 0.68 | 0.02 | FALSE |
79 | GTEx | Whole Blood | CARD9 | 0.08 | 0.07 | lasso | 1 | 0.05 | 4.2e-05 | 9.1 | 9.1 | 1.1e-19 | -0.04 | 0.97 | 0.00 | TRUE |
80 | GTEx | Whole Blood | DNLZ | 0.34 | 0.21 | enet | 27 | 0.26 | 8.0e-24 | -4.1 | -7.0 | 2.5e-12 | -0.04 | 1.00 | 0.00 | FALSE |
81 | METSIM | Adipose | CARD9 | 0.04 | 0.05 | enet | 6 | 0.06 | 5.9e-09 | -7.4 | 8.9 | 4.9e-19 | -0.03 | 1.00 | 0.00 | FALSE |
82 | METSIM | Adipose | QSOX2 | 0.06 | 0.00 | bslmm | 370 | 0.02 | 1.8e-03 | 17.3 | 16.8 | 3.3e-63 | 0.46 | 0.02 | 0.87 | FALSE |
83 | METSIM | Adipose | SDCCAG3 | 0.08 | 0.04 | bslmm | 357 | 0.05 | 3.9e-08 | 9.3 | -8.4 | 5.3e-17 | -0.06 | 1.00 | 0.00 | FALSE |
84 | NTR | Blood | SNAPC4 | 0.02 | 0.01 | lasso | 5 | 0.02 | 6.3e-07 | 8.2 | -6.7 | 1.5e-11 | 0.03 | 0.92 | 0.00 | FALSE |
85 | YFS | Blood | AGPAT2 | 0.06 | 0.00 | blup | 318 | 0.02 | 1.5e-08 | 0.2 | 5.6 | 1.9e-08 | 0.09 | 0.10 | 0.07 | FALSE |
86 | YFS | Blood | CARD9 | 0.22 | 0.37 | lasso | 5 | 0.39 | 1.3e-137 | 9.0 | 9.5 | 1.6e-21 | -0.04 | 1.00 | 0.00 | FALSE |
87 | YFS | Blood | INPP5E | 0.33 | 0.55 | lasso | 6 | 0.57 | 2.9e-235 | 10.7 | -10.6 | 2.9e-26 | -0.02 | 1.00 | 0.00 | FALSE |
88 | YFS | Blood | PMPCA | 0.03 | 0.01 | lasso | 5 | 0.02 | 2.7e-07 | 8.2 | 7.2 | 4.4e-13 | 0.00 | 0.99 | 0.00 | FALSE |
89 | YFS | Blood | SNHG7 | 0.59 | 0.38 | enet | 18 | 0.39 | 2.6e-137 | -9.2 | 9.2 | 2.6e-20 | 0.03 | 1.00 | 0.00 | FALSE |
90 | YFS | Blood | TMEM141 | 0.06 | 0.04 | enet | 6 | 0.04 | 2.4e-14 | -5.5 | 5.6 | 2.5e-08 | 0.09 | 1.00 | 0.00 | TRUE |
91 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | SEC16A | 0.12 | 0.02 | enet | 10 | 0.03 | 2.2e-03 | -2.9 | -6.0 | 2.4e-09 | 0.05 | 0.06 | 0.03 | FALSE |
92 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | SNHG7 | 0.32 | 0.13 | lasso | 4 | 0.12 | 1.0e-10 | -9.2 | 9.4 | 6.8e-21 | 0.04 | 0.00 | 1.00 | FALSE |
93 | The Cancer Genome Atlas | Breast Invasive Carcinoma | QSOX2 | 0.05 | 0.03 | blup | 32 | 0.03 | 2.8e-07 | -16.7 | 19.0 | 1.1e-80 | 0.68 | 0.37 | 0.58 | FALSE |
94 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SDCCAG3 | 0.05 | 0.01 | blup | 61 | 0.01 | 7.9e-04 | 10.3 | -8.8 | 2.0e-18 | 0.01 | 0.07 | 0.10 | FALSE |
95 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SEC16A | 0.02 | 0.00 | blup | 69 | 0.01 | 1.0e-03 | 10.2 | -10.9 | 8.9e-28 | 0.05 | 0.02 | 0.88 | FALSE |
96 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SNHG7 | 0.32 | 0.20 | lasso | 2 | 0.20 | 6.7e-40 | -9.2 | 9.2 | 3.8e-20 | 0.03 | 0.00 | 1.00 | FALSE |
97 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | DNLZ | 0.48 | 0.15 | blup | 44 | 0.23 | 2.1e-11 | -3.8 | -6.4 | 1.3e-10 | 0.00 | 0.99 | 0.00 | FALSE |
98 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | INPP5E | 0.25 | 0.10 | lasso | 3 | 0.09 | 4.9e-05 | 10.7 | -11.3 | 2.3e-29 | -0.03 | 0.06 | 0.84 | FALSE |
99 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | SNHG7 | 0.35 | 0.18 | lasso | 3 | 0.18 | 2.7e-09 | -9.2 | 9.3 | 1.4e-20 | 0.04 | 0.00 | 1.00 | FALSE |
100 | The Cancer Genome Atlas | Colon Adenocarcinoma | DNLZ | 0.75 | 0.16 | blup | 43 | 0.45 | 2.6e-28 | -4.0 | -6.3 | 3.2e-10 | -0.01 | 1.00 | 0.00 | TRUE |
101 | The Cancer Genome Atlas | Colon Adenocarcinoma | INPP5E | 0.11 | 0.08 | lasso | 2 | 0.08 | 3.4e-05 | 10.7 | -10.9 | 6.9e-28 | -0.02 | 0.03 | 0.80 | FALSE |
102 | The Cancer Genome Atlas | Colon Adenocarcinoma | SDCCAG3 | 0.08 | 0.01 | lasso | 4 | 0.02 | 3.1e-02 | 6.7 | -9.5 | 2.0e-21 | -0.02 | 0.02 | 0.52 | FALSE |
103 | The Cancer Genome Atlas | Colon Adenocarcinoma | SNAPC4 | 0.15 | 0.03 | enet | 12 | 0.05 | 1.0e-03 | 8.2 | -6.0 | 1.9e-09 | 0.00 | 0.07 | 0.08 | FALSE |
104 | The Cancer Genome Atlas | Colon Adenocarcinoma | SNHG7 | 0.32 | 0.22 | enet | 11 | 0.22 | 5.1e-13 | -9.2 | 8.9 | 7.7e-19 | 0.06 | 0.00 | 1.00 | FALSE |
105 | The Cancer Genome Atlas | Esophageal Carcinoma | DNLZ | 0.64 | 0.25 | blup | 43 | 0.34 | 1.8e-11 | -4.0 | -5.7 | 1.3e-08 | 0.01 | 0.89 | 0.02 | FALSE |
106 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | DNLZ | 0.48 | 0.14 | blup | 44 | 0.23 | 3.2e-25 | -4.0 | -5.3 | 1.3e-07 | -0.01 | 1.00 | 0.00 | FALSE |
107 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | INPP5E | 0.03 | 0.01 | blup | 54 | 0.01 | 1.1e-02 | 8.8 | -6.5 | 5.9e-11 | 0.02 | 0.04 | 0.05 | FALSE |
108 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | QSOX2 | 0.10 | 0.03 | enet | 6 | 0.06 | 3.4e-07 | 17.3 | 18.6 | 5.4e-77 | 0.75 | 0.01 | 0.99 | FALSE |
109 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SNHG7 | 0.28 | 0.15 | lasso | 3 | 0.18 | 2.1e-19 | -9.2 | 8.0 | 1.3e-15 | 0.04 | 0.00 | 1.00 | FALSE |
110 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DNLZ | 0.45 | 0.15 | enet | 20 | 0.22 | 5.6e-24 | -3.8 | -5.8 | 7.4e-09 | -0.01 | 1.00 | 0.00 | FALSE |
111 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | QSOX2 | 0.04 | 0.01 | enet | 4 | 0.03 | 3.6e-04 | -16.7 | 20.0 | 2.0e-89 | 0.78 | 0.01 | 0.92 | FALSE |
112 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SDCCAG3 | 0.04 | 0.05 | enet | 6 | 0.04 | 5.1e-05 | 6.7 | -8.2 | 2.8e-16 | 0.00 | 0.32 | 0.65 | FALSE |
113 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SNHG7 | 0.44 | 0.30 | lasso | 3 | 0.31 | 7.2e-35 | -9.2 | 9.1 | 1.0e-19 | 0.03 | 0.00 | 1.00 | FALSE |
114 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | INPP5E | 0.07 | 0.04 | blup | 54 | 0.07 | 6.0e-05 | 11.7 | -11.8 | 2.2e-32 | -0.01 | 0.01 | 0.96 | FALSE |
115 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | QSOX2 | 0.10 | 0.11 | lasso | 2 | 0.10 | 1.6e-06 | -16.7 | 17.1 | 2.5e-65 | 0.45 | 0.18 | 0.67 | FALSE |
116 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SDCCAG3 | 0.05 | 0.01 | blup | 61 | 0.01 | 5.9e-02 | 12.3 | -10.8 | 3.0e-27 | -0.01 | 0.01 | 0.90 | FALSE |
117 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SNAPC4 | 0.33 | 0.00 | blup | 60 | 0.08 | 1.7e-05 | 6.7 | -5.8 | 7.4e-09 | -0.05 | 0.00 | 0.16 | FALSE |
118 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SNHG7 | 0.52 | 0.33 | lasso | 3 | 0.33 | 2.0e-19 | -9.2 | 9.2 | 3.5e-20 | 0.03 | 0.00 | 1.00 | FALSE |
119 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DNLZ | 0.57 | 0.12 | enet | 25 | 0.35 | 5.9e-41 | -4.0 | -5.4 | 6.6e-08 | -0.03 | 1.00 | 0.00 | FALSE |
120 | The Cancer Genome Atlas | Brain Lower Grade Glioma | GPSM1 | 0.06 | 0.01 | enet | 11 | 0.02 | 1.0e-03 | 9.4 | -10.9 | 1.5e-27 | -0.06 | 0.01 | 0.94 | TRUE |
121 | The Cancer Genome Atlas | Brain Lower Grade Glioma | INPP5E | 0.04 | 0.02 | blup | 54 | 0.03 | 4.4e-04 | 10.2 | -7.9 | 2.7e-15 | 0.00 | 0.25 | 0.26 | FALSE |
122 | The Cancer Genome Atlas | Brain Lower Grade Glioma | QSOX2 | 0.06 | 0.05 | lasso | 2 | 0.05 | 2.5e-06 | 17.7 | 20.1 | 1.9e-89 | 0.94 | 0.00 | 1.00 | FALSE |
123 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SNAPC4 | 0.13 | 0.05 | enet | 7 | 0.06 | 1.7e-07 | 9.2 | -8.2 | 3.0e-16 | 0.02 | 0.82 | 0.02 | FALSE |
124 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SNHG7 | 0.58 | 0.37 | lasso | 4 | 0.38 | 1.1e-45 | -9.2 | 8.8 | 1.1e-18 | 0.03 | 0.00 | 1.00 | FALSE |
125 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | SNHG7 | 0.27 | 0.09 | lasso | 3 | 0.12 | 4.5e-06 | -9.2 | 8.3 | 7.2e-17 | 0.04 | 0.00 | 1.00 | FALSE |
126 | The Cancer Genome Atlas | Lung Adenocarcinoma | QSOX2 | 0.05 | 0.05 | enet | 4 | 0.05 | 2.7e-06 | -16.7 | 19.3 | 5.3e-83 | 0.59 | 0.10 | 0.81 | TRUE |
127 | The Cancer Genome Atlas | Lung Adenocarcinoma | SNHG7 | 0.29 | 0.15 | enet | 5 | 0.16 | 2.5e-18 | -9.2 | 8.6 | 7.6e-18 | 0.03 | 0.00 | 1.00 | FALSE |
128 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | DNLZ | 0.42 | 0.15 | enet | 29 | 0.26 | 2.5e-29 | -4.0 | -5.3 | 1.3e-07 | 0.01 | 1.00 | 0.00 | FALSE |
129 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SNHG7 | 0.24 | 0.16 | enet | 13 | 0.16 | 9.6e-18 | -9.2 | 9.5 | 2.5e-21 | 0.04 | 0.00 | 1.00 | FALSE |
130 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | SNHG7 | 0.26 | 0.12 | lasso | 1 | 0.11 | 6.9e-08 | -9.2 | 9.2 | 2.5e-20 | 0.03 | 0.00 | 1.00 | FALSE |
131 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | DNLZ | 0.63 | 0.22 | enet | 20 | 0.30 | 5.8e-13 | -4.0 | -6.0 | 2.1e-09 | -0.01 | 1.00 | 0.00 | FALSE |
132 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | SNHG7 | 0.34 | 0.22 | enet | 8 | 0.23 | 6.2e-10 | -9.2 | 8.8 | 1.1e-18 | 0.03 | 0.00 | 1.00 | FALSE |
133 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | SNHG7 | 0.45 | 0.22 | lasso | 2 | 0.21 | 1.0e-08 | -9.2 | 9.1 | 1.4e-19 | 0.03 | 0.00 | 1.00 | FALSE |
134 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DNLZ | 0.69 | 0.22 | enet | 23 | 0.38 | 1.8e-41 | -3.8 | -6.1 | 1.2e-09 | -0.02 | 1.00 | 0.00 | FALSE |
135 | The Cancer Genome Atlas | Prostate Adenocarcinoma | QSOX2 | 0.08 | 0.07 | lasso | 4 | 0.08 | 1.2e-08 | -16.7 | 20.0 | 2.1e-89 | 0.74 | 0.04 | 0.95 | FALSE |
136 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SDCCAG3 | 0.08 | 0.05 | lasso | 2 | 0.05 | 3.3e-06 | 6.7 | -8.0 | 1.7e-15 | 0.01 | 0.42 | 0.53 | FALSE |
137 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SEC16A | 0.08 | 0.10 | lasso | 4 | 0.08 | 1.9e-08 | 12.7 | -12.4 | 1.7e-35 | -0.04 | 0.00 | 1.00 | FALSE |
138 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SNAPC4 | 0.16 | 0.02 | blup | 60 | 0.03 | 4.9e-04 | 8.6 | -7.7 | 1.5e-14 | -0.04 | 0.09 | 0.39 | FALSE |
139 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SNHG7 | 0.51 | 0.37 | enet | 3 | 0.38 | 2.4e-42 | -9.2 | 9.2 | 4.1e-20 | 0.04 | 0.00 | 1.00 | FALSE |
140 | The Cancer Genome Atlas | Rectum Adenocarcinoma | DNLZ | 0.75 | 0.03 | enet | 20 | 0.22 | 7.0e-06 | -4.0 | -6.5 | 6.4e-11 | 0.02 | 0.00 | 0.10 | FALSE |
141 | The Cancer Genome Atlas | Soft Tissue Sarcoma | DNLZ | 0.32 | 0.02 | enet | 19 | 0.08 | 2.3e-05 | -4.0 | -5.4 | 5.2e-08 | -0.03 | 0.02 | 0.06 | FALSE |
142 | The Cancer Genome Atlas | Soft Tissue Sarcoma | SNHG7 | 0.42 | 0.16 | lasso | 5 | 0.23 | 5.1e-14 | -9.2 | 8.6 | 5.9e-18 | 0.04 | 0.00 | 1.00 | FALSE |
143 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | QSOX2 | 0.28 | 0.01 | enet | 4 | 0.05 | 1.6e-02 | -16.7 | 18.7 | 7.2e-78 | 0.70 | 0.00 | 0.46 | FALSE |
144 | The Cancer Genome Atlas | Stomach Adenocarcinoma | SNHG7 | 0.25 | 0.14 | lasso | 2 | 0.13 | 6.5e-10 | -9.2 | 9.2 | 2.6e-20 | 0.03 | 0.00 | 1.00 | FALSE |
145 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | INPP5E | 0.10 | 0.06 | blup | 54 | 0.08 | 8.1e-04 | 9.9 | -11.1 | 1.6e-28 | -0.01 | 0.06 | 0.51 | FALSE |
146 | The Cancer Genome Atlas | Thyroid Carcinoma | DNLZ | 0.63 | 0.19 | enet | 21 | 0.33 | 2.1e-33 | -3.8 | -6.3 | 3.6e-10 | -0.01 | 1.00 | 0.00 | FALSE |
147 | The Cancer Genome Atlas | Thyroid Carcinoma | INPP5E | 0.11 | 0.16 | lasso | 3 | 0.16 | 2.4e-15 | 8.8 | -9.6 | 6.9e-22 | 0.00 | 0.99 | 0.01 | FALSE |
148 | The Cancer Genome Atlas | Thyroid Carcinoma | QSOX2 | 0.06 | 0.01 | blup | 32 | 0.05 | 1.6e-05 | 17.3 | 16.2 | 3.2e-59 | 0.65 | 0.00 | 0.95 | FALSE |
149 | The Cancer Genome Atlas | Thyroid Carcinoma | SDCCAG3 | 0.16 | 0.14 | lasso | 4 | 0.12 | 8.2e-12 | 6.7 | -6.8 | 7.4e-12 | -0.01 | 1.00 | 0.00 | FALSE |
150 | The Cancer Genome Atlas | Thyroid Carcinoma | SNHG7 | 0.53 | 0.40 | lasso | 3 | 0.41 | 9.4e-43 | -9.2 | 9.6 | 6.2e-22 | 0.04 | 0.00 | 1.00 | FALSE |
151 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | SNHG7 | 0.30 | 0.15 | lasso | 8 | 0.12 | 3.4e-04 | -9.2 | 9.2 | 5.2e-20 | 0.05 | 0.00 | 0.98 | FALSE |