Best TWAS P=7.69e-12 · Best GWAS P=1.31e-11 conditioned to 0.217
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | IPO8 | 0.22 | 0.28 | lasso | 8 | 0.29 | 1.0e-35 | -6.5 | 6.5 | 5.8e-11 | -0.99 | 0.01 | 0.99 | FALSE |
2 | GTEx | Adipose Subcutaneous | IPO8 | 0.13 | 0.09 | lasso | 6 | 0.12 | 2.7e-10 | -6.5 | 6.4 | 1.4e-10 | -0.92 | 0.01 | 0.99 | FALSE |
3 | GTEx | Adipose Visceral Omentum | IPO8 | 0.17 | 0.08 | lasso | 2 | 0.05 | 9.9e-04 | -6.7 | 6.7 | 2.7e-11 | -0.99 | 0.01 | 0.98 | FALSE |
4 | GTEx | Artery Tibial | IPO8 | 0.17 | 0.14 | lasso | 4 | 0.14 | 4.5e-11 | -6.6 | 6.3 | 2.8e-10 | -0.93 | 0.01 | 0.99 | FALSE |
5 | GTEx | Breast Mammary Tissue | IPO8 | 0.11 | 0.11 | lasso | 10 | 0.08 | 4.3e-05 | -6.5 | 6.7 | 2.5e-11 | -0.97 | 0.01 | 0.98 | FALSE |
6 | GTEx | Breast Mammary Tissue (Female) | IPO8 | 0.12 | 0.10 | lasso | 3 | 0.04 | 2.0e-02 | -6.5 | 6.7 | 1.8e-11 | -0.93 | 0.02 | 0.88 | FALSE |
7 | GTEx | Cells EBV-transformed lymphocytes | IPO8 | 0.22 | 0.14 | lasso | 4 | 0.14 | 2.5e-05 | 4.1 | 5.9 | 3.2e-09 | -0.82 | 0.03 | 0.97 | FALSE |
8 | GTEx | Cells Transformed fibroblasts | IPO8 | 0.25 | 0.22 | enet | 19 | 0.26 | 9.4e-20 | -6.7 | 6.2 | 4.5e-10 | -0.90 | 0.01 | 0.99 | FALSE |
9 | GTEx | Colon Transverse | IPO8 | 0.11 | 0.11 | lasso | 2 | 0.10 | 2.4e-05 | -6.5 | 6.6 | 3.6e-11 | -0.98 | 0.01 | 0.99 | FALSE |
10 | GTEx | Esophagus Mucosa | IPO8 | 0.30 | 0.14 | lasso | 6 | 0.19 | 1.1e-12 | -6.5 | 5.7 | 1.5e-08 | -0.82 | 0.01 | 0.99 | FALSE |
11 | GTEx | Esophagus Muscularis | IPO8 | 0.24 | 0.19 | lasso | 6 | 0.18 | 5.7e-11 | -6.7 | 6.5 | 9.1e-11 | -0.97 | 0.01 | 0.99 | FALSE |
12 | GTEx | Lung | IPO8 | 0.07 | 0.06 | lasso | 5 | 0.07 | 7.5e-06 | -6.5 | 6.1 | 8.6e-10 | -0.90 | 0.02 | 0.98 | FALSE |
13 | GTEx | Skin Sun Exposed Lower leg | IPO8 | 0.23 | 0.08 | lasso | 10 | 0.13 | 1.1e-10 | 4.0 | 5.8 | 8.7e-09 | -0.85 | 0.03 | 0.97 | FALSE |
14 | GTEx | Whole Blood | IPO8 | 0.09 | 0.00 | lasso | 4 | 0.00 | 2.9e-01 | -6.5 | 6.1 | 1.1e-09 | -0.95 | 0.02 | 0.89 | FALSE |
15 | METSIM | Adipose | IPO8 | 0.06 | 0.04 | lasso | 6 | 0.03 | 9.2e-06 | -6.6 | 6.7 | 2.8e-11 | -0.99 | 0.01 | 0.99 | FALSE |
16 | ROSMAP | Brain Pre-frontal Cortex | IPO8 | 0.21 | 0.23 | lasso | 12 | 0.22 | 8.0e-28 | -6.5 | 6.6 | 3.9e-11 | -0.95 | 0.01 | 0.99 | FALSE |
17 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | IPO8 | 0.06 | 0.04 | lasso | 8 | 0.03 | 1.5e-03 | -6.6 | 6.5 | 1.0e-10 | -0.98 | 0.01 | 0.96 | FALSE |
18 | The Cancer Genome Atlas | Breast Invasive Carcinoma | IPO8 | 0.05 | 0.03 | lasso | 3 | 0.03 | 1.3e-06 | -6.5 | 6.4 | 1.7e-10 | -0.96 | 0.01 | 0.99 | FALSE |
19 | The Cancer Genome Atlas | Colon Adenocarcinoma | IPO8 | 0.06 | 0.06 | blup | 64 | 0.05 | 6.2e-04 | -6.5 | 6.7 | 1.7e-11 | -0.97 | 0.01 | 0.97 | FALSE |
20 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | IPO8 | 0.06 | 0.02 | blup | 58 | 0.02 | 3.0e-03 | -3.4 | 5.2 | 2.3e-07 | -0.83 | 0.01 | 0.89 | FALSE |
21 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | IPO8 | 0.08 | 0.07 | enet | 7 | 0.06 | 4.9e-07 | -6.7 | 6.5 | 1.1e-10 | -0.98 | 0.01 | 0.99 | FALSE |
22 | The Cancer Genome Atlas | Brain Lower Grade Glioma | IPO8 | 0.12 | 0.07 | lasso | 4 | 0.07 | 3.2e-08 | -6.5 | 6.5 | 5.8e-11 | -0.99 | 0.01 | 0.99 | FALSE |
23 | The Cancer Genome Atlas | Lung Adenocarcinoma | IPO8 | 0.06 | 0.04 | blup | 58 | 0.04 | 1.5e-05 | -6.8 | 6.8 | 7.7e-12 | -0.92 | 0.01 | 0.99 | TRUE |
24 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | IPO8 | 0.04 | 0.03 | blup | 58 | 0.03 | 9.7e-05 | -6.5 | 6.6 | 3.5e-11 | -0.95 | 0.01 | 0.98 | FALSE |
25 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | IPO8 | 0.09 | 0.05 | blup | 64 | 0.03 | 2.9e-02 | -6.5 | 6.6 | 4.1e-11 | -0.98 | 0.01 | 0.92 | FALSE |
26 | The Cancer Genome Atlas | Prostate Adenocarcinoma | IPO8 | 0.06 | 0.04 | blup | 64 | 0.03 | 2.1e-04 | -6.5 | 6.0 | 2.5e-09 | -0.88 | 0.01 | 0.98 | FALSE |
27 | The Cancer Genome Atlas | Soft Tissue Sarcoma | IPO8 | 0.07 | 0.04 | lasso | 7 | 0.02 | 1.9e-02 | -6.5 | 5.8 | 6.4e-09 | -0.94 | 0.01 | 0.96 | FALSE |
28 | The Cancer Genome Atlas | Stomach Adenocarcinoma | IPO8 | 0.04 | 0.04 | enet | 7 | 0.02 | 8.1e-03 | -6.5 | 6.6 | 4.9e-11 | -0.98 | 0.01 | 0.94 | FALSE |
29 | The Cancer Genome Atlas | Thyroid Carcinoma | IPO8 | 0.07 | 0.06 | blup | 58 | 0.07 | 5.6e-07 | -6.7 | 6.1 | 1.1e-09 | -0.95 | 0.01 | 0.99 | FALSE |