Best TWAS P=4.66e-24 · Best GWAS P=6.68e-51 conditioned to 4.08e-18
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | SSPN | 0.16 | 0.06 | lasso | 7 | 0.07 | 1.1e-06 | -5.2 | 6.5 | 9.6e-11 | 0.42 | 0.79 | 0.13 | FALSE |
2 | GTEx | Adipose Subcutaneous | RP11-283G6.5 | 0.13 | 0.04 | lasso | 7 | 0.02 | 5.8e-03 | -5.2 | 5.9 | 3.3e-09 | 0.35 | 0.16 | 0.55 | TRUE |
3 | GTEx | Brain Putamen basal ganglia | STK38L | 0.28 | 0.08 | lasso | 7 | 0.05 | 2.6e-02 | 4.8 | 5.5 | 3.7e-08 | 0.00 | 0.08 | 0.15 | TRUE |
4 | GTEx | Breast Mammary Tissue | SSPN | 0.27 | 0.00 | lasso | 9 | 0.02 | 4.1e-02 | -5.1 | 5.5 | 5.1e-08 | 0.47 | 0.17 | 0.43 | TRUE |
5 | GTEx | Breast Mammary Tissue | RP11-283G6.5 | 0.17 | 0.02 | enet | 9 | 0.02 | 2.9e-02 | -5.1 | 10.1 | 4.7e-24 | 0.68 | 0.04 | 0.67 | TRUE |
6 | GTEx | Breast Mammary Tissue (Male) | SSPN | 0.23 | -0.01 | enet | 47 | 0.02 | 1.3e-01 | 11.8 | 7.5 | 8.2e-14 | 0.49 | 0.05 | 0.29 | FALSE |
7 | GTEx | Breast Mammary Tissue (Male) | RP11-283G6.5 | 0.04 | 0.00 | enet | 16 | -0.01 | 5.1e-01 | -5.1 | 7.5 | 9.0e-14 | 0.53 | 0.05 | 0.17 | TRUE |
8 | GTEx | Cells Transformed fibroblasts | SSPN | 0.14 | 0.07 | enet | 15 | 0.16 | 3.1e-12 | -5.2 | 6.0 | 2.2e-09 | 0.31 | 1.00 | 0.00 | FALSE |
9 | GTEx | Cells Transformed fibroblasts | RP11-283G6.5 | 0.16 | 0.05 | enet | 14 | 0.15 | 2.2e-11 | -5.2 | 6.0 | 1.6e-09 | 0.30 | 1.00 | 0.00 | TRUE |
10 | GTEx | Esophagus Mucosa | MRPS35 | 0.18 | 0.00 | enet | 20 | 0.01 | 6.6e-02 | -5.4 | 6.0 | 2.7e-09 | -0.05 | 0.03 | 0.72 | TRUE |
11 | GTEx | Heart Atrial Appendage | SSPN | 0.27 | 0.00 | enet | 4 | 0.01 | 1.2e-01 | -5.2 | 5.3 | 1.3e-07 | 0.31 | 0.09 | 0.14 | TRUE |
12 | YFS | Blood | ITPR2 | 0.27 | 0.19 | lasso | 7 | 0.22 | 1.9e-69 | 9.9 | -9.7 | 2.8e-22 | -0.65 | 1.00 | 0.00 | FALSE |
13 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | SSPN | 0.15 | 0.04 | lasso | 3 | 0.07 | 4.6e-04 | -4.5 | 6.0 | 1.6e-09 | 0.51 | 0.02 | 0.57 | TRUE |
14 | The Cancer Genome Atlas | Prostate Adenocarcinoma | BHLHE41 | 0.03 | 0.02 | enet | 9 | 0.02 | 2.8e-03 | -5.5 | 6.0 | 2.0e-09 | 0.21 | 0.05 | 0.52 | TRUE |
15 | The Cancer Genome Atlas | Thyroid Carcinoma | SSPN | 0.08 | 0.03 | lasso | 4 | 0.04 | 7.5e-05 | -7.9 | 8.0 | 1.8e-15 | 0.17 | 0.24 | 0.02 | TRUE |