TWAS
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Models
Genes
Traits
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Traits
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Blood White Count
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chr12:25,589,747-27,864,341
Best TWAS P=7.55e-09 · Best GWAS P=1.53e-11 conditioned to 8.48e-07
25.5M
26M
26.5M
27M
27.5M
0
2
4
6
8
10
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Cells Transformed fibroblasts
SSPN
0.14
0.07
enet
15
0.16
3.1e-12
-4.8
5.8
7.5e-09
-0.46
0.26
0.74
TRUE
3
GTEx
Lung
TM7SF3
0.19
0.05
enet
14
0.16
5.4e-12
-4.3
-5.4
7.8e-08
-0.05
0.26
0.64
TRUE
2
GTEx
Cells Transformed fibroblasts
RP11-283G6.5
0.16
0.05
enet
14
0.15
2.2e-11
-4.8
5.6
1.9e-08
-0.48
0.62
0.38
FALSE
4
GTEx
Thyroid
TM7SF3
0.34
0.16
enet
36
0.22
5.1e-17
-2.9
-5.2
1.6e-07
-0.01
0.73
0.02
FALSE
5
The Cancer Genome Atlas
Prostate Adenocarcinoma
BHLHE41
0.03
0.02
enet
9
0.02
2.8e-03
-5.4
5.2
2.2e-07
-0.72
0.03
0.73
FALSE