TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Blood White Count
:
←
→
chr1:209,232,444-210,653,374
Best TWAS P=2.07e-10 · Best GWAS P=2.78e-09 conditioned to 0.597
209.2M
209.4M
209.6M
209.8M
210M
210.2M
210.4M
210.6M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
5
The Cancer Genome Atlas
Breast Invasive Carcinoma
TRAF3IP3
0.02
0.00
blup
86
0.01
1.0e-02
-5.5
6.4
2.1e-10
-0.90
0.02
0.63
TRUE
2
GTEx
Whole Blood
TRAF3IP3
0.21
0.03
enet
23
0.11
2.0e-10
3.7
6.3
3.4e-10
-0.59
0.10
0.90
FALSE
3
METSIM
Adipose
TRAF3IP3
0.04
0.01
blup
491
0.01
6.3e-03
-5.8
5.9
2.9e-09
-0.65
0.02
0.94
FALSE
1
GTEx
Spleen
TRAF3IP3
0.28
0.17
lasso
5
0.18
2.6e-05
-5.9
5.7
1.5e-08
-0.88
0.02
0.92
FALSE
4
NTR
Blood
TRAF3IP3
0.05
0.04
lasso
10
0.05
1.7e-16
-5.3
5.3
1.4e-07
-0.86
0.09
0.91
FALSE