Best TWAS P=2.71e-20 · Best GWAS P=3.14e-35 conditioned to 4.81e-34
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Brain Lower Grade Glioma | GALNTL1 | 0.06 | 0.01 | blup | 101 | 0.02 | 0.0018 | 9.4 | 9.2 | 2.7e-20 | 0.02 | 0.01 | 0.84 | TRUE |
| 2 | The Cancer Genome Atlas | Stomach Adenocarcinoma | GALNTL1 | 0.09 | 0.00 | blup | 101 | 0.02 | 0.0198 | -1.3 | 5.6 | 2.5e-08 | -0.07 | 0.01 | 0.61 | FALSE |