Best TWAS P=4.24e-14 · Best GWAS P=5.49e-18 conditioned to 9.21e-10
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | CHD9 | 0.07 | 0.04 | enet | 18 | 0.03 | 2.1e-04 | 7.7 | 6.5 | 1.1e-10 | 0.54 | 0.02 | 0.97 | FALSE |
| 2 | YFS | Blood | CHD9 | 0.03 | 0.02 | lasso | 3 | 0.01 | 1.6e-05 | 6.1 | -7.5 | 4.2e-14 | -0.40 | 0.53 | 0.45 | TRUE |