TWAS
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Usage
Models
Genes
Traits
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Traits
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Blood Platelet Count
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chr3:8,294,862-8,858,201
Best TWAS P=5.69e-12 · Best GWAS P=7.29e-11 conditioned to 0.00262
8.3M
8.4M
8.5M
8.6M
8.7M
8.8M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
LMCD1
0.08
0.0
blup
137
0.04
2.9e-05
-3.7
-6.9
5.7e-12
0.59
0.01
0.95
TRUE
2
The Cancer Genome Atlas
Skin Cutaneous Melanoma
LMCD1
0.17
0.1
enet
4
0.13
2.0e-04
-4.3
5.5
3.4e-08
-0.36
0.09
0.30
FALSE