TWAS
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Models
Genes
Traits
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Traits
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Blood Platelet Count
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chr1:36,079,508-37,561,638
Best TWAS P=1.07e-10 · Best GWAS P=7.11e-14 conditioned to NaN
36M
36.2M
36.4M
36.6M
36.8M
37M
37.2M
37.4M
37.6M
0
5
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
GTEx
Skin Sun Exposed Lower leg
SH3D21
0.15
0.07
lasso
5
0.08
4.7e-07
-7.5
-6.5
1.1e-10
0.94
0.00
1.00
TRUE
2
GTEx
Artery Tibial
STK40
0.06
0.03
lasso
2
0.04
4.4e-04
4.4
-5.4
6.9e-08
0.37
0.08
0.41
TRUE
1
CommonMind
Brain Pre-frontal Cortex
LSM10
0.08
0.00
blup
366
0.02
1.1e-03
2.8
5.3
1.2e-07
-0.30
0.14
0.05
FALSE
4
The Cancer Genome Atlas
Colon Adenocarcinoma
FAM176B
0.14
0.04
blup
23
0.04
1.8e-03
4.6
-5.3
1.4e-07
0.88
0.00
0.94
FALSE