Best TWAS P=1.43e-13 · Best GWAS P=1.24e-13 conditioned to 1
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | TOM1 | 0.04 | 0.02 | enet | 8 | 0.03 | 6.3e-05 | 4.2 | 5.3 | 1.4e-07 | 0.71 | 0.06 | 0.92 | FALSE |
| 2 | GTEx | Adipose Subcutaneous | TOM1 | 0.09 | 0.06 | lasso | 4 | 0.05 | 4.4e-05 | 6.5 | 7.1 | 8.7e-13 | 0.96 | 0.02 | 0.98 | FALSE |
| 3 | GTEx | Muscle Skeletal | TOM1 | 0.16 | 0.13 | lasso | 15 | 0.11 | 3.1e-11 | 7.3 | 7.4 | 1.4e-13 | 0.99 | 0.02 | 0.98 | TRUE |
| 4 | GTEx | Spleen | TOM1 | 0.57 | 0.14 | lasso | 12 | 0.08 | 4.3e-03 | 5.8 | 6.8 | 9.4e-12 | 0.81 | 0.02 | 0.93 | FALSE |
| 5 | NTR | Blood | TOM1 | 0.05 | 0.05 | lasso | 5 | 0.06 | 2.3e-17 | 7.4 | 6.9 | 5.3e-12 | 0.94 | 0.02 | 0.98 | FALSE |
| 6 | YFS | Blood | TOM1 | 0.13 | 0.23 | lasso | 10 | 0.24 | 3.1e-77 | 5.4 | 6.6 | 4.9e-11 | 0.90 | 0.66 | 0.34 | FALSE |
| 7 | The Cancer Genome Atlas | Breast Invasive Carcinoma | HMGXB4 | 0.01 | 0.01 | blup | 59 | 0.01 | 8.3e-03 | 7.3 | 6.9 | 3.9e-12 | 0.96 | 0.02 | 0.84 | FALSE |
| 8 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | HMGXB4 | 0.05 | 0.03 | blup | 59 | 0.03 | 7.1e-03 | 1.8 | 5.7 | 9.1e-09 | 0.88 | 0.02 | 0.41 | FALSE |
| 9 | The Cancer Genome Atlas | Thyroid Carcinoma | TOM1 | 0.03 | 0.03 | blup | 65 | 0.02 | 1.7e-03 | 7.0 | 6.2 | 6.2e-10 | 0.88 | 0.02 | 0.79 | FALSE |