Best TWAS P=7.19e-10 · Best GWAS P=1.21e-11 conditioned to 0.00462
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | MICU1 | 0.04 | 0.06 | lasso | 5 | 0.07 | 4.6e-09 | 5.4 | -5.2 | 2.1e-07 | -0.78 | 0.98 | 0.02 | FALSE |
2 | GTEx | Adipose Subcutaneous | MICU1 | 0.06 | 0.05 | lasso | 6 | 0.05 | 3.7e-05 | 5.8 | 6.2 | 7.2e-10 | 0.92 | 0.23 | 0.76 | TRUE |
3 | GTEx | Adipose Subcutaneous | DNAJB12 | 0.06 | 0.06 | lasso | 3 | 0.06 | 1.6e-05 | 5.2 | 5.6 | 2.3e-08 | 0.89 | 0.40 | 0.59 | FALSE |
4 | GTEx | Artery Tibial | MICU1 | 0.03 | 0.06 | lasso | 4 | 0.04 | 8.0e-04 | 5.2 | 5.1 | 2.7e-07 | 0.87 | 0.38 | 0.57 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | MICU1 | 0.08 | 0.07 | lasso | 4 | 0.06 | 3.9e-05 | 5.5 | 5.8 | 7.9e-09 | 0.81 | 0.44 | 0.47 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | DNAJB12 | 0.22 | 0.17 | lasso | 6 | 0.16 | 6.5e-12 | 5.2 | 5.2 | 1.9e-07 | 0.89 | 0.91 | 0.09 | FALSE |
7 | GTEx | Esophagus Muscularis | DNAJB12 | 0.07 | 0.07 | lasso | 3 | 0.06 | 2.6e-04 | 5.2 | 5.2 | 2.4e-07 | 0.86 | 0.18 | 0.68 | FALSE |
8 | GTEx | Pancreas | DNAJB12 | 0.08 | 0.00 | lasso | 4 | 0.02 | 4.7e-02 | 5.5 | 5.5 | 3.0e-08 | 0.80 | 0.15 | 0.33 | FALSE |
9 | GTEx | Skin Sun Exposed Lower leg | MICU1 | 0.02 | 0.02 | lasso | 4 | 0.01 | 9.3e-02 | 5.5 | 5.9 | 3.3e-09 | 0.86 | 0.19 | 0.48 | FALSE |
10 | GTEx | Skin Sun Exposed Lower leg | DNAJB12 | 0.14 | 0.08 | lasso | 3 | 0.06 | 6.8e-06 | 5.8 | 5.6 | 2.3e-08 | 0.92 | 0.37 | 0.61 | FALSE |
11 | GTEx | Spleen | DNAJB12 | 0.12 | 0.08 | lasso | 5 | 0.06 | 1.1e-02 | 5.8 | 6.0 | 2.1e-09 | 0.92 | 0.07 | 0.76 | FALSE |
12 | GTEx | Stomach | ASCC1 | 0.20 | 0.02 | lasso | 5 | 0.02 | 3.1e-02 | 5.6 | 5.5 | 4.7e-08 | 0.68 | 0.21 | 0.19 | FALSE |
13 | GTEx | Thyroid | DNAJB12 | 0.22 | 0.20 | lasso | 9 | 0.21 | 7.6e-16 | 5.2 | 5.5 | 2.9e-08 | 0.90 | 0.80 | 0.20 | FALSE |
14 | METSIM | Adipose | DNAJB12 | 0.15 | 0.04 | bslmm | 379 | 0.08 | 2.2e-12 | -2.2 | 5.7 | 1.2e-08 | 0.70 | 0.05 | 0.95 | FALSE |
15 | YFS | Blood | DNAJB12 | 0.08 | 0.05 | enet | 21 | 0.05 | 2.0e-15 | 5.9 | 5.6 | 1.7e-08 | 0.79 | 0.09 | 0.91 | FALSE |
16 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ASCC1 | 0.02 | 0.01 | lasso | 3 | 0.01 | 2.0e-02 | 5.9 | 6.0 | 2.6e-09 | 0.85 | 0.00 | 0.91 | FALSE |
17 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DNAJB12 | 0.02 | 0.03 | lasso | 1 | 0.02 | 6.3e-03 | 5.7 | 5.7 | 1.1e-08 | 0.84 | 0.04 | 0.70 | FALSE |
18 | The Cancer Genome Atlas | Lung Adenocarcinoma | DNAJB12 | 0.04 | 0.03 | enet | 5 | 0.03 | 1.6e-04 | 5.8 | 5.2 | 2.0e-07 | 0.88 | 0.05 | 0.91 | FALSE |
19 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | DNAJB12 | 0.03 | 0.04 | blup | 36 | 0.05 | 4.8e-04 | 5.8 | 5.7 | 1.6e-08 | 0.89 | 0.03 | 0.81 | FALSE |
20 | The Cancer Genome Atlas | Thyroid Carcinoma | CBARA1 | 0.03 | 0.02 | blup | 111 | 0.03 | 5.5e-04 | 5.3 | 5.3 | 9.7e-08 | 0.78 | 0.18 | 0.67 | FALSE |
21 | The Cancer Genome Atlas | Thyroid Carcinoma | DNAJB12 | 0.10 | 0.09 | lasso | 5 | 0.10 | 1.4e-09 | 5.8 | 5.6 | 1.9e-08 | 0.91 | 0.32 | 0.68 | FALSE |