[Hub]/) : Traits : Allergy or Eczema : ← →

chr3:195,734,915-197,161,849

Best TWAS P=4.05e-10 · Best GWAS P=1.62e-08 conditioned to 0.286

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	GTEx	Adipose Subcutaneous	PIGX	0.11	0.05	lasso	2	0.04	3.4e-04	-5.3	5.3	1.1e-07	-0.91	0.02	0.98	FALSE
2	GTEx	Adipose Visceral Omentum	CEP19	0.27	0.15	lasso	4	0.15	5.3e-08	-5.6	5.6	2.0e-08	-1.00	0.01	0.99	FALSE
3	GTEx	Adrenal Gland	CEP19	0.24	0.17	lasso	3	0.15	4.8e-06	-5.6	5.6	2.4e-08	-0.99	0.01	0.98	FALSE
4	GTEx	Artery Aorta	PIGX	0.19	0.12	lasso	3	0.12	3.6e-07	-5.5	5.4	6.1e-08	-0.90	0.01	0.99	FALSE
5	GTEx	Artery Aorta	CEP19	0.17	0.09	lasso	2	0.05	8.5e-04	-5.2	5.4	8.6e-08	-0.95	0.02	0.98	FALSE
6	GTEx	Artery Coronary	CEP19	0.33	0.15	lasso	3	0.14	2.0e-05	-5.2	5.2	1.8e-07	-0.90	0.01	0.97	FALSE
7	GTEx	Artery Tibial	CEP19	0.11	0.07	lasso	3	0.07	5.3e-06	-5.6	5.5	3.0e-08	-0.99	0.01	0.99	FALSE
8	GTEx	Brain Caudate basal ganglia	CEP19	0.31	0.18	lasso	5	0.18	8.0e-06	-5.1	5.4	6.0e-08	-0.98	0.02	0.97	FALSE
9	GTEx	Cells Transformed fibroblasts	CEP19	0.38	0.23	lasso	6	0.24	2.2e-18	-5.6	5.2	2.2e-07	-0.96	0.01	0.99	FALSE
10	GTEx	Esophagus Muscularis	PIGX	0.12	0.01	lasso	5	0.02	3.7e-02	-5.5	5.3	1.3e-07	-0.87	0.01	0.96	FALSE
11	GTEx	Esophagus Muscularis	CEP19	0.16	0.11	lasso	4	0.07	3.4e-05	-5.2	5.4	8.0e-08	-0.96	0.02	0.98	FALSE
12	GTEx	Heart Atrial Appendage	CEP19	0.19	0.08	lasso	6	0.07	5.9e-04	-5.5	5.6	2.2e-08	-0.97	0.01	0.98	FALSE
13	GTEx	Lung	PIGX	0.21	0.08	enet	7	0.08	1.8e-06	-5.1	5.4	5.1e-08	-0.96	0.02	0.98	FALSE
14	GTEx	Nerve Tibial	CEP19	0.45	0.26	lasso	8	0.25	7.4e-18	-5.2	5.3	1.5e-07	-0.96	0.03	0.97	FALSE
15	GTEx	Skin Not Sun Exposed Suprapubic	PIGX	0.17	0.11	lasso	3	0.13	1.7e-07	-5.5	5.7	1.5e-08	-0.96	0.01	0.99	FALSE
16	GTEx	Skin Sun Exposed Lower leg	PIGX	0.13	0.10	lasso	4	0.09	4.7e-08	-5.5	5.5	2.9e-08	-0.92	0.01	0.99	FALSE
17	GTEx	Skin Sun Exposed Lower leg	NRROS	0.07	0.02	enet	14	0.03	9.6e-04	-4.6	-5.6	2.8e-08	0.17	0.10	0.42	TRUE
18	GTEx	Stomach	PIGX	0.22	0.18	lasso	2	0.16	3.7e-08	-5.2	5.2	1.9e-07	-0.94	0.03	0.97	FALSE
19	GTEx	Testis	CEP19	0.58	0.50	lasso	2	0.50	5.6e-25	-5.5	5.5	4.1e-08	-1.00	0.01	0.99	FALSE
20	GTEx	Thyroid	PIGX	0.12	0.05	lasso	3	0.04	2.3e-04	-5.2	5.5	4.8e-08	-0.93	0.02	0.97	FALSE
21	GTEx	Whole Blood	CEP19	0.10	0.09	lasso	3	0.09	8.0e-09	-5.5	5.4	6.8e-08	-0.98	0.02	0.98	FALSE
22	METSIM	Adipose	CEP19	0.15	0.04	enet	14	0.09	5.4e-14	-5.2	5.9	4.4e-09	-0.82	0.03	0.97	FALSE
23	NTR	Blood	PIGX	0.04	0.03	bslmm	421	0.03	6.4e-10	-5.5	6.3	4.0e-10	-0.81	0.01	0.99	TRUE
24	YFS	Blood	PIGX	0.07	0.04	bslmm	441	0.04	4.0e-14	-5.3	5.1	2.9e-07	-0.85	0.02	0.98	FALSE
25	The Cancer Genome Atlas	Colon Adenocarcinoma	PIGX	0.06	0.01	blup	66	0.01	6.6e-02	-5.3	5.6	2.7e-08	-0.85	0.01	0.88	FALSE
26	The Cancer Genome Atlas	Head and Neck Squamous Cell Carcinoma	C3orf34	0.08	0.14	lasso	5	0.15	2.3e-16	-5.2	5.3	1.3e-07	-0.94	0.03	0.97	FALSE
27	The Cancer Genome Atlas	Head and Neck Squamous Cell Carcinoma	PIGX	0.08	0.08	lasso	4	0.08	4.5e-09	-5.5	5.3	1.1e-07	-0.88	0.01	0.99	FALSE
28	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	C3orf34	0.05	0.07	lasso	1	0.06	1.1e-07	-5.5	5.5	4.0e-08	-1.00	0.01	0.99	FALSE
29	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	C3orf34	0.06	0.05	lasso	2	0.02	2.8e-02	-5.6	5.5	4.0e-08	-1.00	0.01	0.94	FALSE
30	The Cancer Genome Atlas	Brain Lower Grade Glioma	C3orf34	0.07	0.09	lasso	2	0.09	1.2e-10	-5.5	5.7	1.2e-08	-0.96	0.01	0.99	FALSE
31	The Cancer Genome Atlas	Lung Adenocarcinoma	C3orf34	0.05	0.05	enet	10	0.04	1.5e-05	-5.2	5.7	1.5e-08	-0.97	0.01	0.98	FALSE
32	The Cancer Genome Atlas	Lung Squamous Cell Carcinoma	C3orf34	0.04	0.04	lasso	2	0.04	2.0e-05	-5.5	5.8	7.7e-09	-0.94	0.01	0.99	FALSE
33	The Cancer Genome Atlas	Lung Squamous Cell Carcinoma	PIGX	0.03	0.03	enet	8	0.04	2.6e-05	-5.5	5.7	9.0e-09	-0.83	0.01	0.97	FALSE
34	The Cancer Genome Atlas	Testicular Germ Cell Tumors	C3orf34	0.20	0.21	lasso	5	0.23	1.5e-08	-5.2	5.1	2.9e-07	-0.92	0.02	0.98	FALSE