1712 significantly associated models · 379 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 2235672 | 2742491 | 2 | 1 | 1.3e-09 | 3.4e-12 | 1.1e-05 | 60 | LOC115110 |
2 | 1 | 7686056 | 9637591 | 4 | 1 | 1.0e-17 | 1.3e-16 | 1.9e-02 | 92 | RERE |
3 | 1 | 11626858 | 12156236 | 1 | 1 | 1.8e-07 | 9.3e-11 | 6.0e-10 | 9 | CLCN6 |
4 | 1 | 15668276 | 16844848 | 1 | 1 | 2.9e-07 | 2.6e-05 | 2.3e-04 | 23 | RP11-5P18.10 |
5 | 1 | 24372971 | 25768937 | 1 | 1 | 1.1e-07 | 2.8e-14 | 1.7e-09 | 37 | CLIC4 |
6 | 1 | 35215224 | 36716820 | 2 | 1 | 2.5e-09 | 8.5e-11 | 1.4e-03 | 76 | ZMYM4 |
7 | 1 | 66585659 | 68152438 | 2 | 1 | 4.3e-09 | 7.6e-09 | 3.5e-01 | 97 | MIER1 |
8 | 1 | 92608852 | 94120642 | 2 | 1 | 1.8e-07 | 1.7e-07 | 2.9e-03 | 68 | FAM69A |
9 | 1 | 150679358 | 153103772 | 5 | 10 | 1.8e-24 | 7.9e-23 | NaN | NaN | LINGO4 POGZ S100A11 SMCP TDRKH |
10 | 1 | 153225886 | 156572984 | 9 | 4 | 1.9e-12 | 2.5e-15 | 2.7e-06 | 65 | C1orf43 IL6R MSTO2P ZBTB7B |
11 | 1 | 160452218 | 161954448 | 5 | 1 | 5.4e-13 | 9.5e-14 | 4.1e-02 | 92 | PPOX |
12 | 1 | 166702558 | 168182443 | 1 | 1 | 2.6e-24 | 8.9e-26 | 1.0e+00 | 100 | CD247 |
13 | 1 | 172311679 | 173713130 | 2 | 1 | 4.1e-18 | 4.4e-18 | 1.0e+00 | 100 | TNFSF4 |
14 | 1 | 206194087 | 207458906 | 1 | 1 | 4.6e-09 | 5.3e-07 | 4.0e-01 | 97 | RASSF5 |
15 | 2 | 27971195 | 29344127 | 1 | 1 | 3.7e-11 | 5.1e-09 | 8.1e-02 | 91 | RP11-373D23.3 |
16 | 2 | 29976100 | 31563885 | 1 | 1 | 2.7e-09 | 5.6e-09 | 1.0e+00 | 100 | LCLAT1 |
17 | 2 | 60466491 | 62123953 | 9 | 1 | 2.5e-11 | 1.2e-09 | 9.5e-03 | 82 | AC010733.5 |
18 | 2 | 101922170 | 104027106 | 7 | 8 | 4.8e-85 | 1.1e-77 | NaN | NaN | IL18RAP IL1R1 IL1R2 IL1RL1 SLC9A2 |
19 | 2 | 134181178 | 135909462 | 1 | 1 | 7.5e-08 | 4.8e-05 | 8.5e-03 | 58 | MGAT5 |
20 | 2 | 143154021 | 145209076 | 1 | 1 | 3.6e-08 | 4.5e-11 | 3.0e-06 | 50 | ARHGAP15 |
21 | 2 | 187518260 | 189011680 | 1 | 1 | 7.4e-08 | 4.8e-08 | 1.0e+00 | 100 | CALCRL |
22 | 2 | 197134790 | 200117777 | 6 | 1 | 9.3e-22 | 6.8e-20 | 2.3e-03 | 89 | RFTN2 |
23 | 3 | 32465430 | 33884651 | 1 | 1 | 8.1e-08 | 5.6e-15 | 2.4e-10 | 34 | CRTAP |
24 | 3 | 120799666 | 122356172 | 4 | 1 | 6.0e-17 | 8.7e-17 | 1.0e+00 | 100 | SLC15A2 |
25 | 3 | 140350567 | 141867638 | 1 | 1 | 5.4e-14 | 2.0e-14 | 1.0e+00 | 100 | ZBTB38 |
26 | 3 | 195734915 | 197161849 | 4 | 2 | 4.0e-10 | 1.6e-08 | 2.9e-01 | 96 | NRROS PIGX |
27 | 4 | 38079294 | 39824758 | 6 | 11 | 1.5e-96 | 6.0e-105 | NaN | NaN | FAM114A1 TLR1 TLR10 TLR6 |
28 | 4 | 102736456 | 104627833 | 4 | 1 | 4.6e-15 | 1.4e-13 | 5.4e-01 | 99 | NFKB1 |
29 | 4 | 122377715 | 124935698 | 3 | 5 | 4.1e-47 | 3.6e-38 | 1.8e-01 | 99 | KIAA1109 SPATA5 |
30 | 5 | 34920257 | 36938041 | 6 | 11 | 2.1e-54 | 2.6e-59 | 1.0e+00 | 100 | CAPSL IL7R LMBRD2 NADKD1 SPEF2 UGT3A2 |
31 | 5 | 108927715 | 111770880 | 6 | 11 | 3.2e-52 | 2.9e-65 | NaN | NaN | CAMK4 SLC25A46 TMEM232 TSLP WDR36 |
32 | 5 | 130904163 | 132839137 | 5 | 2 | 1.9e-10 | 9.2e-14 | 2.1e-08 | 43 | IRF1 KIF3A |
33 | 5 | 140062547 | 142230251 | 5 | 3 | 3.5e-11 | 6.4e-11 | 1.6e-01 | 95 | AC008781.7 FCHSD1 NDFIP1 |
34 | 5 | 176040488 | 177426530 | 4 | 1 | 7.0e-12 | 1.2e-10 | 3.0e-01 | 97 | RGS14 |
35 | 6 | 33745071 | 35362848 | 2 | 1 | 3.0e-09 | 1.7e-08 | 1.7e-01 | 94 | PACSIN1 |
36 | 6 | 36073831 | 36598209 | 1 | 1 | 2.5e-08 | 1.7e-08 | 1.7e-02 | 82 | ETV7 |
37 | 6 | 89941356 | 91704536 | 1 | 1 | 7.3e-16 | 1.1e-17 | 3.3e-04 | 82 | BACH2 |
38 | 6 | 107328319 | 108840870 | 1 | 1 | 2.3e-07 | 2.2e-06 | 2.7e-01 | 94 | SCML4 |
39 | 6 | 134905567 | 136516257 | 3 | 1 | 2.3e-14 | 5.7e-16 | 2.0e-03 | 85 | AHI1 |
40 | 7 | 27186596 | 28918565 | 1 | 3 | 5.5e-13 | 1.2e-20 | 2.8e-06 | 75 | JAZF1 |
41 | 7 | 76058767 | 77744459 | 3 | 1 | 7.5e-13 | 3.1e-15 | 1.0e-03 | 83 | GSAP |
42 | 7 | 98404438 | 99820050 | 1 | 1 | 8.3e-08 | 1.0e-06 | 1.3e-01 | 90 | ZKSCAN5 |
43 | 8 | 128107136 | 129812343 | 1 | 1 | 1.9e-07 | 2.2e-15 | 1.3e-09 | 41 | PVT1 |
44 | 9 | 4934896 | 7345304 | 4 | 3 | 4.1e-19 | 1.7e-27 | 3.0e-11 | 63 | GLDC KIAA1432 RANBP6 |
45 | 9 | 93170435 | 94567835 | 1 | 1 | 2.0e-07 | 1.4e-07 | 1.0e+00 | 100 | RP11-305L7.1 |
46 | 9 | 122881960 | 124487495 | 6 | 1 | 4.0e-14 | 3.6e-14 | 1.0e+00 | 100 | TRAF1 |
47 | 9 | 126321003 | 127872298 | 2 | 1 | 1.0e-11 | 3.5e-11 | 1.3e-02 | 86 | NEK6 |
48 | 9 | 130855537 | 132601229 | 5 | 1 | 5.4e-13 | 3.2e-12 | 2.2e-01 | 97 | ENDOG |
49 | 9 | 135883620 | 136399075 | 1 | 1 | 7.7e-08 | 2.9e-09 | 1.3e-03 | 71 | ABO |
50 | 10 | 5238196 | 7317647 | 3 | 3 | 6.8e-13 | 2.2e-28 | 1.7e-18 | 37 | IL2RA PRKCQ |
51 | 10 | 50896333 | 52285511 | 1 | 1 | 4.0e-09 | 3.2e-09 | 1.0e+00 | 100 | NCOA4 |
52 | 10 | 103527782 | 105647095 | 12 | 1 | 3.5e-19 | 7.2e-17 | 2.3e-01 | 98 | WBP1L |
53 | 11 | 2068717 | 2564409 | 1 | 1 | 7.2e-09 | 1.0e-08 | 3.7e-03 | 74 | C11orf21 |
54 | 11 | 36068766 | 36777339 | 2 | 2 | 2.2e-11 | 9.2e-10 | 1.4e-04 | 61 | PRR5L TRAF6 |
55 | 11 | 64669105 | 66690454 | 18 | 11 | 6.6e-17 | 2.5e-23 | NaN | NaN | BANF1 C11orf68 CFL1 DKFZp761E198 EFEMP2 EIF1AD OVOL1 PCNXL3 SNX32 |
56 | 11 | 66714782 | 68113724 | 1 | 1 | 7.2e-08 | 7.4e-08 | 1.0e+00 | 100 | ACY3 |
57 | 11 | 75453877 | 77069746 | 3 | 2 | 3.8e-44 | 3.3e-71 | 2.5e-25 | 66 | LRRC32 RP11-111M22.3 |
58 | 11 | 110721187 | 112335631 | 3 | 1 | 2.8e-13 | 7.9e-14 | 1.0e+00 | 100 | SIK2 |
59 | 12 | 50110317 | 50601155 | 1 | 1 | 3.1e-09 | 3.9e-07 | 4.8e-01 | 98 | AQP5 |
60 | 12 | 55389667 | 58303535 | 15 | 3 | 1.1e-23 | 3.9e-28 | 3.1e-02 | 96 | GPR182 STAT6 SUOX |
61 | 12 | 111522000 | 113517494 | 4 | 2 | 2.1e-09 | 1.2e-18 | 1.5e-05 | 76 | ADAM1A TRAFD1 |
62 | 12 | 120468697 | 124591385 | 15 | 3 | 1.2e-17 | 1.2e-17 | 1.0e+00 | 100 | MLXIP MPHOSPH9 SPPL3 |
63 | 13 | 40440805 | 41928314 | 2 | 2 | 1.2e-19 | 6.8e-14 | 2.3e-01 | 98 | FOXO1 SUGT1L1 |
64 | 13 | 72661114 | 74288499 | 1 | 2 | 2.5e-10 | 1.7e-14 | 3.5e-06 | 64 | PIBF1 |
65 | 13 | 99603738 | 100287551 | 1 | 1 | 4.3e-12 | 2.1e-11 | 5.7e-03 | 83 | UBAC2 |
66 | 14 | 34820295 | 36440325 | 3 | 1 | 5.5e-11 | 6.9e-10 | 2.7e-02 | 87 | KIAA0391 |
67 | 14 | 92733536 | 93401178 | 1 | 1 | 1.9e-07 | 1.3e-07 | 4.1e-04 | 55 | RIN3 |
68 | 14 | 102544860 | 104074810 | 1 | 1 | 3.7e-10 | 5.3e-12 | 2.9e-03 | 81 | TRAF3 |
69 | 15 | 40360741 | 42749023 | 13 | 7 | 1.7e-18 | 7.4e-20 | NaN | NaN | CHP LOC729082 NDUFAF1 NUSAP1 OIP5 RTF1 |
70 | 15 | 66662107 | 68183665 | 1 | 1 | 1.5e-22 | 1.0e-31 | 4.9e-11 | 68 | SMAD3 |
71 | 15 | 74440419 | 76108550 | 4 | 1 | 2.0e-09 | 1.0e-09 | 9.1e-03 | 82 | SCAMP2 |
72 | 15 | 89921477 | 92225560 | 8 | 3 | 3.1e-27 | 8.7e-22 | 3.1e-01 | 99 | FES IQGAP1 ZNF774 |
73 | 16 | 10325245 | 12138068 | 6 | 11 | 1.1e-36 | 6.1e-45 | NaN | NaN | CLEC16A DEXI RMI2 RP11-396B14.2 RP11-876N24.4 RP11-876N24.5 |
74 | 16 | 26626758 | 29595483 | 21 | 2 | 2.0e-12 | 1.1e-10 | 1.0e+00 | 100 | JMJD5 SULT1A2 |
75 | 16 | 75081551 | 75740249 | 2 | 1 | 4.6e-08 | 8.4e-07 | 8.9e-01 | 100 | TMEM170A |
76 | 17 | 2001657 | 2529588 | 1 | 1 | 3.8e-09 | 7.3e-09 | 6.2e-02 | 90 | SGSM2 |
77 | 17 | 16718225 | 18325085 | 3 | 2 | 6.3e-09 | 4.4e-09 | 3.7e-01 | 98 | PEMT TOM1L2 |
78 | 17 | 34146026 | 35644076 | 4 | 1 | 6.3e-09 | 1.3e-08 | 1.0e+00 | 100 | ZNHIT3 |
79 | 17 | 36710513 | 39502398 | 20 | 9 | 7.1e-35 | 9.2e-32 | 1.0e+00 | 100 | CASC3 ERBB2 GSDMA MED24 ORMDL3 SMARCE1 |
80 | 17 | 39863901 | 41675702 | 10 | 2 | 1.2e-12 | 3.0e-10 | 1.1e-01 | 94 | NAGLU PTRF |
81 | 17 | 42628193 | 43570226 | 3 | 1 | 7.3e-09 | 4.5e-10 | 1.2e-02 | 84 | C17orf46 |
82 | 17 | 47119135 | 47685050 | 1 | 1 | 1.2e-10 | 1.4e-11 | 2.8e-02 | 89 | ZNF652 |
83 | 18 | 47706580 | 49306115 | 2 | 1 | 2.0e-08 | 2.9e-09 | 1.0e+00 | 100 | SMAD4 |
84 | 18 | 51100222 | 52540420 | 1 | 1 | 6.0e-11 | 8.7e-11 | 1.7e-01 | 96 | POLI |
85 | 19 | 10120571 | 10648933 | 2 | 1 | 1.4e-08 | 3.8e-09 | 3.8e-02 | 88 | ICAM5 |
86 | 20 | 44050342 | 45456440 | 1 | 1 | 8.9e-10 | 2.5e-07 | 1.5e-01 | 92 | CD40 |
87 | 20 | 51935779 | 52456445 | 1 | 1 | 1.7e-15 | 4.3e-22 | 4.3e-12 | 49 | ZNF217 |
88 | 20 | 61522825 | 62912463 | 9 | 1 | 2.6e-13 | 1.8e-13 | 1.9e-02 | 90 | STMN3 |
89 | 21 | 39849553 | 41383143 | 2 | 1 | 1.0e-07 | 2.6e-07 | 1.0e+00 | 100 | PSMG1 |
90 | 22 | 21075537 | 22685340 | 4 | 1 | 2.4e-09 | 3.1e-09 | 9.9e-02 | 92 | CCDC116 |
91 | 22 | 28125740 | 29304253 | 1 | 1 | 6.9e-08 | 7.1e-07 | 8.0e-02 | 88 | TTC28 |
92 | 22 | 40472399 | 42907619 | 14 | 1 | 8.6e-10 | 9.2e-10 | 1.0e+00 | 100 | TEF |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 6 | 1.17 | 3.3 |
GTEx | Breast Mammary Tissue | 26 | 1.32 | 2.9 |
NTR | Blood | 34 | 1.42 | 2.9 |
YFS | Blood | 51 | 1.11 | 2.9 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 26 | 1.56 | 2.9 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 21 | 1.64 | 2.9 |
GTEx | Brain Nucleus accumbens basal ganglia | 16 | 1.85 | 2.8 |
GTEx | Brain Putamen basal ganglia | 11 | 1.76 | 2.8 |
GTEx | Breast Mammary Tissue (Female) | 18 | 1.09 | 2.8 |
GTEx | Cells Transformed fibroblasts | 53 | 1.26 | 2.8 |
GTEx | Esophagus Mucosa | 37 | 1.11 | 2.8 |
GTEx | Pancreas | 25 | 1.53 | 2.8 |
GTEx | Testis | 35 | 1.11 | 2.8 |
GTEx | Whole Blood | 22 | 1.11 | 2.8 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 26 | 0.95 | 2.8 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 42 | 1.02 | 2.8 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 21 | 1.02 | 2.8 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 34 | 1.35 | 2.8 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 24 | 1.50 | 2.8 |
GTEx | Brain Cortex | 17 | 1.64 | 2.7 |
GTEx | Brain Frontal Cortex BA9 | 10 | 1.08 | 2.7 |
GTEx | Breast Mammary Tissue (Male) | 17 | 1.42 | 2.7 |
GTEx | Colon Sigmoid | 17 | 1.16 | 2.7 |
GTEx | Colon Transverse | 22 | 1.07 | 2.7 |
GTEx | Esophagus Muscularis | 44 | 1.36 | 2.7 |
GTEx | Skin Not Sun Exposed Suprapubic | 28 | 1.14 | 2.7 |
GTEx | Spleen | 15 | 1.06 | 2.7 |
GTEx | Thyroid | 52 | 1.30 | 2.7 |
METSIM | Adipose | 50 | 1.09 | 2.7 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 28 | 0.95 | 2.7 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 21 | 1.24 | 2.7 |
GTEx | Adipose Subcutaneous | 34 | 0.97 | 2.6 |
GTEx | Adipose Visceral Omentum | 20 | 0.98 | 2.6 |
GTEx | Artery Aorta | 35 | 1.18 | 2.6 |
GTEx | Artery Tibial | 39 | 1.04 | 2.6 |
GTEx | Brain Cerebellar Hemisphere | 19 | 1.28 | 2.6 |
GTEx | Brain Hypothalamus | 9 | 1.52 | 2.6 |
GTEx | Esophagus Gastroesophageal Junction | 20 | 1.38 | 2.6 |
GTEx | Liver | 9 | 1.26 | 2.6 |
GTEx | Nerve Tibial | 48 | 1.11 | 2.6 |
GTEx | Pituitary | 15 | 1.34 | 2.6 |
GTEx | Skin Sun Exposed Lower leg | 47 | 1.29 | 2.6 |
ROSMAP | Brain Pre-frontal Cortex | 37 | 0.84 | 2.6 |
CommonMind | Brain Pre-frontal Cortex | 57 | 1.06 | 2.6 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 16 | 0.97 | 2.6 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 37 | 0.84 | 2.6 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 16 | 0.77 | 2.6 |
The Cancer Genome Atlas | Esophageal Carcinoma | 5 | 0.73 | 2.6 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 40 | 0.93 | 2.6 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 5 | 0.45 | 2.6 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 53 | 1.14 | 2.6 |
GTEx | Adrenal Gland | 13 | 0.89 | 2.5 |
GTEx | Artery Coronary | 9 | 0.76 | 2.5 |
GTEx | Brain Cerebellum | 22 | 1.11 | 2.5 |
GTEx | Heart Atrial Appendage | 12 | 0.76 | 2.5 |
GTEx | Lung | 31 | 1.08 | 2.5 |
GTEx | Muscle Skeletal | 26 | 0.90 | 2.5 |
GTEx | Prostate | 9 | 1.08 | 2.5 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 11 | 1.00 | 2.5 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 10 | 0.98 | 2.5 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 11 | 0.83 | 2.5 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 6 | 1.12 | 2.5 |
The Cancer Genome Atlas | Thyroid Carcinoma | 49 | 0.95 | 2.5 |
GTEx | Brain Caudate basal ganglia | 9 | 0.98 | 2.4 |
GTEx | Cells EBV-transformed lymphocytes | 16 | 1.13 | 2.4 |
GTEx | Ovary | 10 | 1.10 | 2.4 |
GTEx | Stomach | 15 | 1.03 | 2.4 |
GTEx | Uterus | 6 | 1.06 | 2.4 |
GTEx | Heart Left Ventricle | 9 | 0.59 | 2.3 |
GTEx | Small Intestine Terminal Ileum | 5 | 1.08 | 2.3 |
GTEx | Vagina | 4 | 0.63 | 2.3 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 8 | 1.15 | 2.3 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 6 | 0.56 | 2.3 |
GTEx | Brain Hippocampus | 5 | 0.95 | 2.2 |