Best TWAS P=2.92e-15 · Best GWAS P=8.2e-15 conditioned to 0.299
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Brain Cerebellum | TNFRSF14 | 0.17 | 0.07 | enet | 6 | 0.10 | 7.6e-04 | -7.4 | -7.9 | 2.9e-15 | 0.91 | 0.01 | 0.94 | TRUE |
2 | GTEx | Brain Cerebellum | RP3-395M20.8 | 0.19 | 0.05 | enet | 8 | 0.06 | 5.9e-03 | -6.1 | -7.7 | 1.0e-14 | 0.85 | 0.02 | 0.90 | FALSE |
3 | GTEx | Brain Cortex | PLCH2 | 0.27 | 0.03 | enet | 17 | 0.04 | 2.6e-02 | -6.1 | -5.7 | 1.2e-08 | 0.27 | 0.05 | 0.06 | FALSE |
4 | GTEx | Esophagus Mucosa | FAM213B | 0.08 | 0.02 | lasso | 3 | 0.01 | 3.9e-02 | -6.1 | -6.1 | 9.8e-10 | 0.64 | 0.01 | 0.91 | FALSE |
5 | GTEx | Esophagus Muscularis | RP3-395M20.12 | 0.08 | 0.06 | enet | 6 | 0.06 | 2.3e-04 | -7.4 | 7.2 | 5.4e-13 | -0.84 | 0.01 | 0.98 | FALSE |
6 | GTEx | Ovary | PRKCZ | 0.36 | -0.01 | lasso | 5 | 0.00 | 2.5e-01 | -6.1 | -5.9 | 4.7e-09 | 0.37 | 0.06 | 0.19 | FALSE |
7 | GTEx | Pancreas | TNFRSF14 | 0.13 | 0.04 | enet | 8 | 0.04 | 1.0e-02 | -7.4 | -6.2 | 5.0e-10 | 0.89 | 0.02 | 0.97 | FALSE |
8 | GTEx | Prostate | RP3-395M20.12 | 0.25 | 0.25 | lasso | 2 | 0.15 | 1.5e-04 | -6.0 | 5.9 | 2.9e-09 | -0.52 | 0.34 | 0.33 | FALSE |
9 | GTEx | Skin Sun Exposed Lower leg | WRAP73 | 0.30 | 0.07 | enet | 26 | 0.19 | 1.1e-15 | -3.2 | -5.1 | 2.8e-07 | 0.00 | 0.06 | 0.83 | FALSE |
10 | GTEx | Whole Blood | FAM213B | 0.06 | 0.00 | lasso | 3 | 0.00 | 6.5e-01 | 4.0 | 6.0 | 2.5e-09 | -0.81 | 0.02 | 0.78 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | TTC34 | 0.09 | 0.03 | enet | 21 | 0.07 | 5.7e-09 | -4.7 | -5.3 | 1.0e-07 | 0.75 | 0.15 | 0.85 | FALSE |
12 | ROSMAP | Brain Pre-frontal Cortex | RP3-395M20.9 | 0.06 | 0.01 | blup | 367 | 0.04 | 5.7e-06 | -4.8 | -6.1 | 1.4e-09 | 0.75 | 0.06 | 0.94 | FALSE |
13 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | WDR8 | 0.07 | 0.09 | lasso | 3 | 0.08 | 2.6e-07 | 5.1 | -5.2 | 2.3e-07 | 0.00 | 0.00 | 1.00 | FALSE |
14 | The Cancer Genome Atlas | Breast Invasive Carcinoma | LOC115110 | 0.01 | 0.01 | enet | 14 | 0.01 | 5.2e-04 | -7.6 | 6.2 | 8.0e-10 | -0.71 | 0.01 | 0.95 | FALSE |
15 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MMEL1 | 0.02 | 0.02 | blup | 38 | 0.03 | 3.3e-06 | -4.2 | 6.4 | 1.3e-10 | -0.87 | 0.18 | 0.82 | FALSE |
16 | The Cancer Genome Atlas | Breast Invasive Carcinoma | WDR8 | 0.06 | 0.03 | enet | 14 | 0.04 | 2.6e-09 | 5.1 | -5.8 | 8.9e-09 | 0.02 | 0.00 | 1.00 | TRUE |
17 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | WDR8 | 0.15 | 0.11 | enet | 18 | 0.16 | 6.0e-18 | -3.2 | -5.2 | 2.0e-07 | 0.00 | 0.01 | 0.97 | FALSE |
18 | The Cancer Genome Atlas | Brain Lower Grade Glioma | HES5 | 0.03 | 0.02 | blup | 39 | 0.01 | 1.0e-02 | -6.1 | -5.3 | 1.4e-07 | 0.42 | 0.14 | 0.04 | FALSE |
19 | The Cancer Genome Atlas | Lung Adenocarcinoma | MMEL1 | 0.05 | 0.03 | blup | 39 | 0.05 | 1.6e-06 | -7.5 | 6.2 | 6.7e-10 | -0.85 | 0.02 | 0.98 | FALSE |
20 | The Cancer Genome Atlas | Prostate Adenocarcinoma | LOC115110 | 0.03 | 0.00 | blup | 50 | 0.01 | 1.7e-02 | -7.8 | 7.6 | 4.0e-14 | -0.87 | 0.01 | 0.64 | FALSE |
21 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MMEL1 | 0.10 | 0.12 | enet | 22 | 0.15 | 8.5e-16 | -4.7 | 6.2 | 5.0e-10 | -0.81 | 0.19 | 0.81 | FALSE |
22 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | TNFRSF14 | 0.18 | 0.02 | blup | 52 | 0.10 | 2.4e-04 | -1.6 | -5.5 | 3.0e-08 | 0.73 | 0.01 | 0.48 | FALSE |