Best TWAS P=1.41e-35 · Best GWAS P=3.1e-34 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | MIIP | 0.08 | 0.08 | lasso | 3 | 0.07 | 5.6e-09 | 11.6 | -11.5 | 2.2e-30 | -0.82 | 0.20 | 0.80 | FALSE |
2 | GTEx | Adipose Subcutaneous | MFN2 | 0.18 | 0.12 | lasso | 5 | 0.12 | 4.6e-10 | 6.6 | 7.0 | 2.6e-12 | 0.46 | 1.00 | 0.00 | TRUE |
3 | GTEx | Adipose Visceral Omentum | MFN2 | 0.22 | 0.08 | enet | 4 | 0.10 | 7.5e-06 | 6.9 | 7.1 | 1.6e-12 | 0.50 | 0.92 | 0.01 | FALSE |
4 | GTEx | Cells Transformed fibroblasts | MFN2 | 0.17 | 0.17 | lasso | 5 | 0.19 | 4.4e-14 | 6.9 | 8.0 | 9.9e-16 | 0.55 | 1.00 | 0.00 | FALSE |
5 | GTEx | Lung | MFN2 | 0.18 | 0.11 | lasso | 6 | 0.12 | 9.6e-10 | 8.4 | 8.9 | 5.3e-19 | 0.54 | 1.00 | 0.00 | FALSE |
6 | GTEx | Skin Sun Exposed Lower leg | MFN2 | 0.10 | 0.02 | lasso | 3 | 0.01 | 5.1e-02 | 9.2 | 9.3 | 1.0e-20 | 0.43 | 0.63 | 0.02 | FALSE |
7 | GTEx | Spleen | MFN2 | 0.36 | 0.18 | enet | 12 | 0.18 | 2.6e-05 | 9.4 | 8.3 | 8.1e-17 | 0.49 | 0.79 | 0.04 | FALSE |
8 | GTEx | Vagina | FBXO6 | 0.45 | 0.14 | lasso | 8 | 0.10 | 3.2e-03 | 8.3 | -7.2 | 4.4e-13 | -0.42 | 0.08 | 0.12 | TRUE |
9 | GTEx | Whole Blood | PLOD1 | 0.19 | 0.16 | lasso | 5 | 0.22 | 6.9e-20 | 8.3 | 8.1 | 5.2e-16 | 0.51 | 1.00 | 0.00 | FALSE |
10 | GTEx | Whole Blood | KIAA2013 | 0.17 | 0.14 | enet | 19 | 0.16 | 1.6e-14 | 8.3 | 8.3 | 9.8e-17 | 0.46 | 1.00 | 0.00 | FALSE |
11 | GTEx | Whole Blood | MFN2 | 0.40 | 0.48 | lasso | 3 | 0.53 | 1.6e-56 | 8.3 | 8.2 | 1.6e-16 | 0.50 | 1.00 | 0.00 | FALSE |
12 | GTEx | Whole Blood | MIIP | 0.22 | 0.19 | lasso | 3 | 0.19 | 2.5e-17 | 8.4 | 8.3 | 6.8e-17 | 0.47 | 1.00 | 0.00 | FALSE |
13 | METSIM | Adipose | MFN2 | 0.06 | 0.07 | lasso | 3 | 0.06 | 1.0e-08 | 6.9 | 7.8 | 8.4e-15 | 0.60 | 0.97 | 0.03 | TRUE |
14 | NTR | Blood | MFN2 | 0.14 | 0.16 | lasso | 3 | 0.17 | 5.1e-52 | 6.9 | 7.6 | 3.1e-14 | 0.54 | 1.00 | 0.00 | FALSE |
15 | NTR | Blood | PLOD1 | 0.03 | 0.03 | lasso | 3 | 0.02 | 1.8e-08 | 7.6 | 7.5 | 5.6e-14 | 0.50 | 1.00 | 0.00 | FALSE |
16 | ROSMAP | Brain Pre-frontal Cortex | MIIP | 0.10 | 0.07 | enet | 14 | 0.09 | 1.2e-11 | 11.6 | -11.0 | 3.5e-28 | -0.71 | 0.36 | 0.64 | TRUE |
17 | YFS | Blood | KIAA2013 | 0.11 | 0.12 | lasso | 5 | 0.12 | 4.8e-37 | 6.6 | 7.9 | 2.7e-15 | 0.41 | 1.00 | 0.00 | FALSE |
18 | YFS | Blood | MFN2 | 0.45 | 0.58 | lasso | 7 | 0.65 | 2.1e-290 | 6.9 | 8.2 | 3.4e-16 | 0.52 | 1.00 | 0.00 | FALSE |
19 | YFS | Blood | PLOD1 | 0.25 | 0.30 | enet | 31 | 0.36 | 8.7e-124 | 8.4 | 6.4 | 1.6e-10 | 0.46 | 1.00 | 0.00 | FALSE |
20 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | MIIP | 0.07 | 0.01 | enet | 9 | 0.02 | 1.8e-02 | 9.4 | -9.8 | 8.6e-23 | -0.51 | 0.02 | 0.14 | FALSE |
21 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MIIP | 0.03 | 0.03 | lasso | 4 | 0.02 | 1.1e-05 | 11.6 | -12.2 | 2.1e-34 | -0.79 | 0.26 | 0.73 | FALSE |
22 | The Cancer Genome Atlas | Colon Adenocarcinoma | MFN2 | 0.09 | 0.06 | enet | 8 | 0.07 | 4.2e-05 | 6.9 | 9.8 | 1.8e-22 | 0.66 | 0.46 | 0.28 | FALSE |
23 | The Cancer Genome Atlas | Colon Adenocarcinoma | MIIP | 0.05 | 0.04 | enet | 3 | 0.04 | 2.8e-03 | 9.9 | -8.8 | 1.2e-18 | -0.45 | 0.07 | 0.18 | FALSE |
24 | The Cancer Genome Atlas | Glioblastoma Multiforme | MIIP | 0.15 | 0.11 | lasso | 2 | 0.08 | 2.0e-03 | 11.6 | -11.8 | 2.9e-32 | -0.81 | 0.01 | 0.95 | FALSE |
25 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | MFN2 | 0.02 | 0.02 | blup | 57 | 0.02 | 4.0e-03 | 9.4 | 7.2 | 8.5e-13 | 0.39 | 0.12 | 0.03 | FALSE |
26 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MIIP | 0.07 | 0.07 | enet | 5 | 0.07 | 3.6e-08 | 11.6 | -12.4 | 1.4e-35 | -0.78 | 0.36 | 0.64 | TRUE |
27 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | PLOD1 | 0.15 | 0.13 | enet | 9 | 0.06 | 1.9e-03 | 4.3 | -5.5 | 3.2e-08 | -0.24 | 0.43 | 0.06 | TRUE |
28 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MIIP | 0.09 | 0.08 | enet | 4 | 0.08 | 4.2e-09 | 11.6 | -12.3 | 7.6e-35 | -0.92 | 0.01 | 0.99 | FALSE |
29 | The Cancer Genome Atlas | Thyroid Carcinoma | MFN2 | 0.18 | 0.01 | blup | 57 | 0.04 | 4.2e-05 | -6.3 | 7.1 | 1.1e-12 | 0.20 | 0.01 | 0.04 | TRUE |