TWAS
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Models
Genes
Traits
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Traits
:
Lung FEV1/FVC ratio
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chr7:115,619,298-117,135,212
Best TWAS P=5.51e-12 · Best GWAS P=1.7e-12 conditioned to 1
115.6M
115.8M
116M
116.2M
116.4M
116.6M
116.8M
117M
117.2M
0
2
4
6
8
10
12
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
GTEx
Artery Aorta
MET
0.21
0.23
lasso
5
0.22
3.0e-12
6.3
-6.9
5.5e-12
-0.96
0.00
1.00
TRUE
3
GTEx
Artery Tibial
MET
0.13
0.11
lasso
8
0.10
6.4e-08
6.3
-6.6
4.2e-11
-0.91
0.01
0.99
FALSE
5
GTEx
Brain Putamen basal ganglia
MET
0.21
0.12
lasso
1
0.05
2.0e-02
-6.0
6.0
2.6e-09
0.56
0.18
0.21
FALSE
4
GTEx
Brain Caudate basal ganglia
MET
0.39
0.35
enet
25
0.30
2.1e-09
-5.8
5.7
1.3e-08
0.57
0.83
0.17
FALSE
1
CommonMind
Brain Pre-frontal Cortex
MET
0.08
0.07
lasso
4
0.07
4.5e-09
-5.9
5.7
1.6e-08
0.56
0.82
0.18
FALSE