Best TWAS P=2.08e-28 · Best GWAS P=2.01e-25 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | AZGP1 | 0.03 | 0.02 | bslmm | 266 | 0.02 | 1.8e-03 | 10.4 | -9.9 | 5.9e-23 | -0.66 | 0.00 | 0.91 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | ZKSCAN1 | 0.04 | 0.02 | enet | 10 | 0.02 | 4.5e-04 | 1.5 | -5.2 | 2.4e-07 | -0.29 | 0.16 | 0.21 | FALSE |
3 | GTEx | Adipose Subcutaneous | TRIM4 | 0.44 | 0.48 | enet | 30 | 0.50 | 2.9e-46 | 6.0 | -5.9 | 3.3e-09 | -0.43 | 1.00 | 0.00 | FALSE |
4 | GTEx | Adipose Subcutaneous | NYAP1 | 0.16 | 0.11 | lasso | 2 | 0.09 | 9.9e-08 | -4.8 | -5.2 | 2.0e-07 | -0.19 | 0.99 | 0.00 | FALSE |
5 | GTEx | Adipose Subcutaneous | CNPY4 | 0.19 | 0.12 | enet | 18 | 0.14 | 1.9e-11 | 8.7 | -8.0 | 8.9e-16 | -0.54 | 0.98 | 0.02 | FALSE |
6 | GTEx | Adipose Visceral Omentum | TRIM4 | 0.40 | 0.39 | lasso | 5 | 0.40 | 4.5e-22 | 6.0 | -6.4 | 1.8e-10 | -0.45 | 1.00 | 0.00 | FALSE |
7 | GTEx | Adipose Visceral Omentum | CNPY4 | 0.23 | 0.00 | lasso | 10 | 0.01 | 5.6e-02 | -3.2 | -6.4 | 1.3e-10 | -0.33 | 0.16 | 0.32 | TRUE |
8 | GTEx | Adrenal Gland | TRIM4 | 0.51 | 0.37 | lasso | 7 | 0.48 | 1.6e-19 | 6.0 | -6.0 | 2.5e-09 | -0.44 | 1.00 | 0.00 | FALSE |
9 | GTEx | Adrenal Gland | STAG3L5P-PVRIG2P-PILRB | 0.32 | 0.25 | enet | 43 | 0.20 | 7.0e-08 | 2.0 | 5.3 | 1.1e-07 | 0.36 | 0.98 | 0.01 | FALSE |
10 | GTEx | Artery Aorta | LRCH4 | 0.12 | 0.04 | enet | 7 | 0.07 | 1.1e-04 | 4.5 | 5.4 | 5.4e-08 | 0.12 | 0.36 | 0.04 | FALSE |
11 | GTEx | Artery Aorta | TRIM4 | 0.33 | 0.42 | lasso | 9 | 0.40 | 2.4e-23 | 6.0 | -6.0 | 1.6e-09 | -0.43 | 1.00 | 0.00 | FALSE |
12 | GTEx | Artery Aorta | CNPY4 | 0.24 | 0.03 | enet | 18 | 0.13 | 1.6e-07 | -3.4 | -5.8 | 8.7e-09 | -0.28 | 0.35 | 0.08 | FALSE |
13 | GTEx | Artery Coronary | TRIM4 | 0.49 | 0.33 | lasso | 9 | 0.27 | 9.2e-10 | 6.0 | -6.2 | 7.2e-10 | -0.44 | 1.00 | 0.00 | FALSE |
14 | GTEx | Artery Tibial | TRIM4 | 0.39 | 0.37 | lasso | 10 | 0.37 | 3.7e-30 | 6.0 | -5.9 | 3.6e-09 | -0.42 | 1.00 | 0.00 | FALSE |
15 | GTEx | Artery Tibial | CNPY4 | 0.16 | 0.06 | lasso | 3 | 0.06 | 2.4e-05 | 8.7 | -8.5 | 2.3e-17 | -0.56 | 0.60 | 0.23 | FALSE |
16 | GTEx | Artery Tibial | ATP5J2 | 0.09 | 0.05 | enet | 19 | 0.07 | 7.4e-06 | -3.7 | 5.6 | 2.2e-08 | 0.23 | 0.70 | 0.01 | FALSE |
17 | GTEx | Brain Cerebellum | STAG3 | 0.14 | 0.12 | lasso | 8 | 0.10 | 5.5e-04 | -5.0 | -5.2 | 2.2e-07 | -0.51 | 0.33 | 0.28 | FALSE |
18 | GTEx | Brain Nucleus accumbens basal ganglia | TRIM4 | 0.14 | 0.11 | lasso | 7 | 0.06 | 1.1e-02 | 6.1 | -6.1 | 9.7e-10 | -0.45 | 0.14 | 0.06 | FALSE |
19 | GTEx | Breast Mammary Tissue | TRIM4 | 0.35 | 0.35 | enet | 22 | 0.37 | 6.1e-20 | 6.0 | -6.3 | 2.6e-10 | -0.48 | 1.00 | 0.00 | FALSE |
20 | GTEx | Breast Mammary Tissue (Female) | TRIM4 | 0.35 | 0.29 | lasso | 10 | 0.28 | 7.7e-09 | 6.1 | -6.4 | 1.2e-10 | -0.47 | 0.98 | 0.00 | FALSE |
21 | GTEx | Breast Mammary Tissue (Female) | ZSCAN21 | 0.09 | 0.10 | lasso | 1 | 0.05 | 1.2e-02 | 8.7 | -8.7 | 4.2e-18 | -0.59 | 0.03 | 0.33 | FALSE |
22 | GTEx | Cells EBV-transformed lymphocytes | TRIM4 | 0.49 | 0.47 | lasso | 7 | 0.47 | 4.3e-17 | 6.0 | -6.1 | 9.1e-10 | -0.44 | 1.00 | 0.00 | FALSE |
23 | GTEx | Cells EBV-transformed lymphocytes | LAMTOR4 | 0.40 | 0.19 | enet | 39 | 0.21 | 2.2e-07 | 1.2 | -5.9 | 4.2e-09 | -0.44 | 0.33 | 0.42 | FALSE |
24 | GTEx | Cells Transformed fibroblasts | ZKSCAN1 | 0.23 | 0.18 | lasso | 5 | 0.19 | 4.9e-14 | 6.1 | -7.6 | 3.2e-14 | -0.65 | 0.98 | 0.02 | FALSE |
25 | GTEx | Cells Transformed fibroblasts | TRIM4 | 0.41 | 0.39 | lasso | 8 | 0.39 | 4.6e-31 | 6.0 | -6.0 | 1.7e-09 | -0.44 | 1.00 | 0.00 | FALSE |
26 | GTEx | Cells Transformed fibroblasts | ZSCAN21 | 0.12 | 0.06 | lasso | 4 | 0.09 | 3.5e-07 | 8.7 | -7.0 | 3.3e-12 | -0.41 | 0.98 | 0.02 | FALSE |
27 | GTEx | Cells Transformed fibroblasts | CNPY4 | 0.22 | 0.02 | enet | 26 | 0.09 | 5.5e-07 | 4.5 | -8.0 | 1.1e-15 | -0.32 | 0.52 | 0.14 | FALSE |
28 | GTEx | Colon Sigmoid | TRIM4 | 0.27 | 0.26 | lasso | 8 | 0.24 | 3.8e-09 | 6.0 | -6.3 | 3.7e-10 | -0.45 | 0.99 | 0.00 | FALSE |
29 | GTEx | Colon Sigmoid | CNPY4 | 0.20 | 0.09 | lasso | 4 | 0.10 | 2.1e-04 | 4.4 | -8.4 | 5.4e-17 | -0.32 | 0.15 | 0.18 | FALSE |
30 | GTEx | Colon Transverse | TRIM4 | 0.33 | 0.33 | enet | 22 | 0.35 | 3.2e-17 | 6.0 | -6.1 | 1.3e-09 | -0.45 | 1.00 | 0.00 | FALSE |
31 | GTEx | Esophagus Gastroesophageal Junction | TRIM4 | 0.35 | 0.24 | lasso | 10 | 0.23 | 7.6e-09 | 6.1 | -6.6 | 4.5e-11 | -0.47 | 0.99 | 0.00 | FALSE |
32 | GTEx | Esophagus Mucosa | TRIM4 | 0.38 | 0.40 | enet | 21 | 0.39 | 1.6e-27 | 6.1 | -6.3 | 3.3e-10 | -0.46 | 1.00 | 0.00 | FALSE |
33 | GTEx | Esophagus Muscularis | TRIM4 | 0.30 | 0.30 | lasso | 9 | 0.29 | 6.8e-18 | 6.0 | -6.2 | 4.5e-10 | -0.43 | 1.00 | 0.00 | FALSE |
34 | GTEx | Esophagus Muscularis | COPS6 | 0.06 | 0.02 | lasso | 3 | 0.02 | 1.4e-02 | 8.5 | -6.5 | 1.1e-10 | -0.46 | 0.14 | 0.20 | FALSE |
35 | GTEx | Heart Atrial Appendage | TRIM4 | 0.23 | 0.25 | lasso | 7 | 0.23 | 9.8e-11 | 6.0 | -6.0 | 1.6e-09 | -0.43 | 1.00 | 0.00 | FALSE |
36 | GTEx | Liver | TRIM4 | 0.33 | 0.30 | lasso | 10 | 0.28 | 1.6e-08 | 6.0 | -6.3 | 2.8e-10 | -0.43 | 0.86 | 0.10 | FALSE |
37 | GTEx | Lung | TRIM4 | 0.35 | 0.35 | lasso | 3 | 0.35 | 5.4e-28 | 6.0 | -6.0 | 1.6e-09 | -0.44 | 1.00 | 0.00 | FALSE |
38 | GTEx | Lung | AZGP1 | 0.08 | 0.09 | enet | 9 | 0.09 | 1.1e-07 | -4.5 | 5.5 | 2.9e-08 | 0.36 | 0.88 | 0.04 | FALSE |
39 | GTEx | Lung | CNPY4 | 0.19 | 0.02 | enet | 26 | 0.10 | 9.6e-08 | -1.6 | -7.2 | 4.6e-13 | -0.47 | 0.14 | 0.58 | FALSE |
40 | GTEx | Muscle Skeletal | TRIM4 | 0.19 | 0.18 | lasso | 4 | 0.18 | 1.3e-17 | 6.0 | -5.9 | 4.4e-09 | -0.42 | 1.00 | 0.00 | FALSE |
41 | GTEx | Muscle Skeletal | ZSCAN21 | 0.09 | 0.09 | lasso | 1 | 0.09 | 8.2e-09 | 8.7 | -8.7 | 4.2e-18 | -0.59 | 0.99 | 0.00 | FALSE |
42 | GTEx | Nerve Tibial | TRIM4 | 0.44 | 0.43 | lasso | 4 | 0.46 | 3.1e-36 | 6.0 | -6.0 | 1.5e-09 | -0.43 | 1.00 | 0.00 | FALSE |
43 | GTEx | Nerve Tibial | CNPY4 | 0.14 | 0.00 | enet | 14 | 0.02 | 1.5e-02 | 10.4 | -11.1 | 2.1e-28 | -0.72 | 0.01 | 0.83 | TRUE |
44 | GTEx | Nerve Tibial | STAG3L5P | 0.06 | 0.03 | enet | 4 | 0.04 | 7.9e-04 | -5.3 | -6.9 | 6.9e-12 | -0.54 | 0.17 | 0.41 | FALSE |
45 | GTEx | Ovary | TRIM4 | 0.20 | 0.04 | enet | 11 | 0.07 | 1.1e-02 | -5.2 | -5.9 | 2.9e-09 | -0.49 | 0.23 | 0.09 | FALSE |
46 | GTEx | Pancreas | TRIM4 | 0.48 | 0.31 | lasso | 12 | 0.34 | 3.2e-15 | 6.0 | -6.4 | 1.6e-10 | -0.43 | 1.00 | 0.00 | FALSE |
47 | GTEx | Pituitary | TRIM4 | 0.53 | 0.40 | lasso | 17 | 0.43 | 3.2e-12 | 6.0 | -6.8 | 7.2e-12 | -0.45 | 0.99 | 0.00 | FALSE |
48 | GTEx | Prostate | TRIM4 | 0.30 | 0.30 | lasso | 5 | 0.20 | 8.2e-06 | 6.1 | -6.2 | 6.0e-10 | -0.44 | 0.65 | 0.15 | FALSE |
49 | GTEx | Skin Not Sun Exposed Suprapubic | C7orf43 | 0.10 | 0.12 | lasso | 2 | 0.10 | 4.0e-06 | -5.4 | 5.4 | 5.4e-08 | 0.45 | 0.95 | 0.00 | FALSE |
50 | GTEx | Skin Not Sun Exposed Suprapubic | TRIM4 | 0.18 | 0.09 | enet | 17 | 0.13 | 1.8e-07 | 6.0 | -7.4 | 1.6e-13 | -0.62 | 0.98 | 0.01 | FALSE |
51 | GTEx | Skin Sun Exposed Lower leg | TRIM4 | 0.39 | 0.26 | lasso | 11 | 0.25 | 5.5e-21 | 6.0 | -6.9 | 6.8e-12 | -0.53 | 1.00 | 0.00 | FALSE |
52 | GTEx | Skin Sun Exposed Lower leg | ZNF3 | 0.05 | 0.01 | lasso | 4 | 0.01 | 7.9e-02 | -4.8 | -8.0 | 1.2e-15 | -0.59 | 0.11 | 0.47 | FALSE |
53 | GTEx | Skin Sun Exposed Lower leg | ZSCAN21 | 0.06 | 0.01 | enet | 9 | 0.02 | 9.7e-03 | -3.2 | -5.6 | 1.8e-08 | -0.32 | 0.21 | 0.09 | FALSE |
54 | GTEx | Small Intestine Terminal Ileum | TRIM4 | 0.40 | 0.37 | lasso | 4 | 0.34 | 1.5e-08 | 6.0 | -6.0 | 1.9e-09 | -0.44 | 0.90 | 0.02 | FALSE |
55 | GTEx | Spleen | TRIM4 | 0.55 | 0.55 | lasso | 10 | 0.53 | 5.8e-16 | 6.1 | -6.2 | 4.6e-10 | -0.44 | 1.00 | 0.00 | FALSE |
56 | GTEx | Stomach | SAP25 | 0.30 | 0.17 | enet | 13 | 0.18 | 8.6e-09 | 4.5 | 5.1 | 3.0e-07 | 0.13 | 0.97 | 0.00 | FALSE |
57 | GTEx | Testis | TRIM4 | 0.42 | 0.35 | lasso | 17 | 0.36 | 8.6e-17 | 6.0 | -7.1 | 1.6e-12 | -0.54 | 1.00 | 0.00 | FALSE |
58 | GTEx | Thyroid | TRIM4 | 0.47 | 0.47 | lasso | 5 | 0.50 | 6.1e-43 | 6.0 | -6.2 | 6.3e-10 | -0.45 | 1.00 | 0.00 | FALSE |
59 | GTEx | Vagina | TRIM4 | 0.32 | 0.19 | lasso | 7 | 0.27 | 6.0e-07 | 6.0 | -6.3 | 2.2e-10 | -0.55 | 0.34 | 0.23 | FALSE |
60 | GTEx | Whole Blood | TRIM4 | 0.12 | 0.05 | lasso | 5 | 0.06 | 5.9e-06 | 6.0 | -6.5 | 9.0e-11 | -0.50 | 0.94 | 0.04 | FALSE |
61 | METSIM | Adipose | TRIM4 | 0.17 | 0.22 | lasso | 13 | 0.22 | 3.9e-32 | 6.0 | -6.3 | 3.4e-10 | -0.46 | 1.00 | 0.00 | FALSE |
62 | NTR | Blood | PVRIG | 0.20 | 0.20 | lasso | 13 | 0.21 | 1.2e-65 | -5.4 | -5.5 | 3.0e-08 | -0.51 | 1.00 | 0.00 | FALSE |
63 | NTR | Blood | TRIM4 | 0.11 | 0.14 | enet | 23 | 0.14 | 1.5e-42 | 6.1 | 6.4 | 1.4e-10 | 0.47 | 1.00 | 0.00 | FALSE |
64 | ROSMAP | Brain Pre-frontal Cortex | STAG3 | 0.11 | 0.12 | enet | 11 | 0.13 | 7.4e-16 | 4.4 | 6.9 | 4.5e-12 | 0.22 | 1.00 | 0.00 | FALSE |
65 | ROSMAP | Brain Pre-frontal Cortex | ZKSCAN1 | 0.05 | 0.01 | blup | 265 | 0.03 | 6.1e-05 | -6.8 | -7.4 | 1.9e-13 | -0.64 | 0.04 | 0.88 | FALSE |
66 | ROSMAP | Brain Pre-frontal Cortex | TRIM4 | 0.08 | 0.09 | lasso | 4 | 0.09 | 2.5e-11 | 6.0 | -5.5 | 3.3e-08 | -0.39 | 1.00 | 0.00 | FALSE |
67 | ROSMAP | Brain Pre-frontal Cortex | AZGP1 | 0.08 | 0.04 | lasso | 5 | 0.05 | 9.1e-07 | 8.9 | -9.8 | 1.0e-22 | -0.86 | 0.01 | 0.99 | FALSE |
68 | ROSMAP | Brain Pre-frontal Cortex | CNPY4 | 0.10 | 0.07 | bslmm | 270 | 0.06 | 9.1e-08 | 8.5 | -7.8 | 8.1e-15 | -0.47 | 1.00 | 0.00 | FALSE |
69 | ROSMAP | Brain Pre-frontal Cortex | AP4M1 | 0.03 | 0.02 | blup | 263 | 0.03 | 3.2e-05 | -5.2 | -6.4 | 1.5e-10 | -0.48 | 0.54 | 0.28 | FALSE |
70 | YFS | Blood | AP4M1 | 0.06 | 0.05 | enet | 9 | 0.07 | 1.2e-20 | -3.4 | -6.2 | 4.5e-10 | -0.32 | 1.00 | 0.00 | FALSE |
71 | YFS | Blood | GAL3ST4 | 0.05 | 0.06 | lasso | 5 | 0.06 | 1.3e-18 | -5.3 | -5.2 | 1.8e-07 | -0.49 | 1.00 | 0.00 | FALSE |
72 | YFS | Blood | TRIM4 | 0.16 | 0.24 | enet | 17 | 0.24 | 9.7e-78 | 6.0 | -6.1 | 1.2e-09 | -0.45 | 1.00 | 0.00 | FALSE |
73 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | AP4M1 | 0.04 | 0.04 | blup | 37 | 0.04 | 1.3e-04 | -3.5 | -5.5 | 3.7e-08 | -0.32 | 0.14 | 0.47 | FALSE |
74 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | TRIM4 | 0.08 | 0.18 | lasso | 6 | 0.16 | 8.3e-14 | 6.0 | -6.2 | 5.0e-10 | -0.47 | 0.89 | 0.11 | FALSE |
75 | The Cancer Genome Atlas | Breast Invasive Carcinoma | AP4M1 | 0.05 | 0.05 | blup | 36 | 0.08 | 1.4e-15 | -2.9 | -5.2 | 1.8e-07 | -0.28 | 1.00 | 0.00 | FALSE |
76 | The Cancer Genome Atlas | Breast Invasive Carcinoma | LRCH4 | 0.01 | 0.00 | blup | 26 | 0.01 | 1.5e-03 | 4.5 | -5.7 | 9.8e-09 | -0.14 | 0.01 | 0.04 | FALSE |
77 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MCM7 | 0.02 | 0.01 | blup | 34 | 0.01 | 1.4e-03 | -4.9 | -7.2 | 8.9e-13 | -0.62 | 0.02 | 0.13 | FALSE |
78 | The Cancer Genome Atlas | Breast Invasive Carcinoma | OR2AE1 | 0.16 | 0.22 | enet | 16 | 0.22 | 3.7e-45 | 6.0 | 6.0 | 2.2e-09 | 0.44 | 0.01 | 0.99 | FALSE |
79 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PVRIG | 0.03 | 0.02 | blup | 24 | 0.02 | 8.5e-05 | -4.8 | -6.2 | 5.4e-10 | -0.61 | 0.01 | 0.86 | FALSE |
80 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TRIM4 | 0.09 | 0.15 | lasso | 7 | 0.15 | 6.3e-30 | 6.0 | -6.5 | 6.9e-11 | -0.48 | 0.99 | 0.01 | FALSE |
81 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | TRIM4 | 0.12 | 0.10 | blup | 52 | 0.09 | 3.7e-05 | 6.1 | -6.9 | 4.2e-12 | -0.54 | 0.04 | 0.96 | FALSE |
82 | The Cancer Genome Atlas | Colon Adenocarcinoma | AP4M1 | 0.09 | 0.09 | lasso | 3 | 0.09 | 8.1e-06 | -3.5 | -5.4 | 7.9e-08 | -0.25 | 0.05 | 0.93 | FALSE |
83 | The Cancer Genome Atlas | Colon Adenocarcinoma | CNPY4 | 0.12 | 0.00 | blup | 34 | 0.01 | 4.4e-02 | 8.4 | -8.0 | 1.1e-15 | -0.45 | 0.01 | 0.74 | FALSE |
84 | The Cancer Genome Atlas | Colon Adenocarcinoma | TRIM4 | 0.22 | 0.28 | lasso | 10 | 0.29 | 5.5e-17 | 7.0 | -6.7 | 1.6e-11 | -0.52 | 0.44 | 0.56 | FALSE |
85 | The Cancer Genome Atlas | Colon Adenocarcinoma | ZSCAN21 | 0.06 | 0.07 | lasso | 3 | 0.05 | 5.9e-04 | 8.7 | -8.5 | 1.5e-17 | -0.57 | 0.12 | 0.26 | FALSE |
86 | The Cancer Genome Atlas | Esophageal Carcinoma | OR2AE1 | 0.18 | -0.01 | blup | 42 | 0.06 | 6.0e-03 | 6.1 | 5.6 | 2.3e-08 | 0.38 | 0.01 | 0.72 | TRUE |
87 | The Cancer Genome Atlas | Glioblastoma Multiforme | OR2AE1 | 0.10 | 0.04 | blup | 42 | 0.07 | 3.5e-03 | 6.1 | 5.7 | 9.4e-09 | 0.42 | 0.01 | 0.78 | FALSE |
88 | The Cancer Genome Atlas | Glioblastoma Multiforme | TRIM4 | 0.23 | 0.13 | blup | 52 | 0.20 | 1.4e-06 | 6.0 | -6.4 | 1.3e-10 | -0.48 | 0.03 | 0.97 | FALSE |
89 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | AP4M1 | 0.05 | 0.04 | blup | 37 | 0.05 | 7.4e-06 | -3.4 | -6.0 | 2.8e-09 | -0.38 | 0.14 | 0.81 | FALSE |
90 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | TRIM4 | 0.10 | 0.12 | enet | 12 | 0.13 | 1.5e-14 | 6.1 | -6.5 | 6.6e-11 | -0.49 | 0.28 | 0.72 | FALSE |
91 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CNPY4 | 0.19 | 0.07 | enet | 18 | 0.11 | 1.6e-12 | 8.4 | -7.8 | 7.9e-15 | -0.46 | 0.00 | 1.00 | FALSE |
92 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LRCH4 | 0.03 | 0.01 | blup | 27 | 0.01 | 1.2e-02 | 5.3 | 5.3 | 1.1e-07 | 0.06 | 0.01 | 0.67 | FALSE |
93 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PMS2L1 | 0.45 | 0.20 | enet | 7 | 0.20 | 2.8e-22 | -5.5 | 5.5 | 4.6e-08 | 0.24 | 0.00 | 1.00 | FALSE |
94 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SPDYE3 | 0.06 | 0.01 | enet | 4 | 0.02 | 2.7e-03 | 4.7 | 5.3 | 1.5e-07 | 0.49 | 0.00 | 0.06 | FALSE |
95 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | TRIM4 | 0.21 | 0.17 | lasso | 6 | 0.18 | 1.1e-19 | 6.1 | -6.1 | 1.0e-09 | -0.44 | 0.99 | 0.01 | FALSE |
96 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PMS2L1 | 0.50 | 0.17 | enet | 3 | 0.17 | 3.7e-10 | -5.5 | 5.4 | 6.7e-08 | 0.24 | 0.00 | 1.00 | FALSE |
97 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | TRIM4 | 0.12 | 0.16 | blup | 52 | 0.20 | 2.0e-11 | 6.0 | -6.0 | 2.7e-09 | -0.46 | 0.50 | 0.50 | FALSE |
98 | The Cancer Genome Atlas | Brain Lower Grade Glioma | OR2AE1 | 0.11 | 0.15 | lasso | 4 | 0.14 | 1.2e-15 | 6.0 | 6.0 | 1.7e-09 | 0.43 | 0.01 | 0.99 | FALSE |
99 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PVRIG | 0.08 | 0.05 | lasso | 2 | 0.04 | 1.5e-05 | -5.4 | -5.3 | 1.4e-07 | -0.45 | 0.01 | 0.99 | FALSE |
100 | The Cancer Genome Atlas | Brain Lower Grade Glioma | TRIM4 | 0.09 | 0.18 | lasso | 5 | 0.18 | 2.0e-19 | 6.0 | -6.1 | 8.4e-10 | -0.46 | 0.99 | 0.01 | FALSE |
101 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | AP4M1 | 0.10 | 0.05 | blup | 36 | 0.03 | 1.9e-02 | 8.5 | -8.5 | 2.1e-17 | -0.72 | 0.01 | 0.92 | FALSE |
102 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | TRIM4 | 0.12 | 0.14 | blup | 52 | 0.16 | 7.2e-08 | -4.8 | -6.2 | 6.1e-10 | -0.48 | 0.50 | 0.50 | FALSE |
103 | The Cancer Genome Atlas | Lung Adenocarcinoma | CNPY4 | 0.04 | 0.03 | lasso | 2 | 0.02 | 1.6e-03 | 8.4 | -8.4 | 6.1e-17 | -0.57 | 0.00 | 0.99 | FALSE |
104 | The Cancer Genome Atlas | Lung Adenocarcinoma | MCM7 | 0.06 | 0.02 | enet | 9 | 0.01 | 2.2e-02 | -4.9 | -5.5 | 3.8e-08 | -0.50 | 0.03 | 0.12 | FALSE |
105 | The Cancer Genome Atlas | Lung Adenocarcinoma | PVRIG | 0.03 | 0.03 | lasso | 2 | 0.02 | 1.0e-03 | -5.3 | -5.3 | 1.1e-07 | -0.45 | 0.01 | 0.98 | FALSE |
106 | The Cancer Genome Atlas | Lung Adenocarcinoma | TAF6 | 0.04 | 0.02 | enet | 5 | 0.01 | 1.3e-02 | -5.2 | -6.1 | 9.5e-10 | -0.40 | 0.04 | 0.18 | FALSE |
107 | The Cancer Genome Atlas | Lung Adenocarcinoma | TRIM4 | 0.08 | 0.14 | lasso | 7 | 0.13 | 3.6e-15 | 6.0 | -6.0 | 1.6e-09 | -0.44 | 0.99 | 0.01 | FALSE |
108 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | TRIM4 | 0.09 | 0.20 | lasso | 4 | 0.19 | 1.7e-21 | 6.0 | -6.4 | 1.6e-10 | -0.47 | 0.95 | 0.05 | FALSE |
109 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | TRIM4 | 0.05 | 0.04 | blup | 52 | 0.03 | 2.5e-03 | 6.0 | -5.8 | 4.9e-09 | -0.44 | 0.14 | 0.60 | FALSE |
110 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | GPC2 | 0.13 | 0.01 | blup | 35 | 0.04 | 7.7e-03 | -5.6 | -6.6 | 3.5e-11 | -0.65 | 0.01 | 0.62 | FALSE |
111 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | TRIM4 | 0.22 | 0.07 | blup | 52 | 0.13 | 3.4e-06 | 6.0 | -5.2 | 2.3e-07 | -0.35 | 0.53 | 0.44 | FALSE |
112 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | OR2AE1 | 0.18 | 0.12 | lasso | 4 | 0.11 | 2.7e-05 | 6.0 | 5.8 | 6.2e-09 | 0.43 | 0.01 | 0.98 | FALSE |
113 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | TRIM4 | 0.16 | 0.19 | lasso | 1 | 0.17 | 3.5e-07 | 6.0 | -6.0 | 2.1e-09 | -0.44 | 0.74 | 0.24 | FALSE |
114 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GJC3 | 0.03 | 0.05 | lasso | 6 | 0.05 | 1.5e-05 | 7.0 | 7.0 | 3.1e-12 | 0.56 | 0.14 | 0.81 | FALSE |
115 | The Cancer Genome Atlas | Prostate Adenocarcinoma | TRIM4 | 0.18 | 0.22 | lasso | 5 | 0.22 | 8.0e-23 | 6.0 | -6.0 | 1.8e-09 | -0.43 | 0.99 | 0.01 | FALSE |
116 | The Cancer Genome Atlas | Rectum Adenocarcinoma | AP4M1 | 0.21 | 0.10 | enet | 4 | 0.14 | 3.7e-04 | -5.5 | -5.5 | 5.1e-08 | -0.28 | 0.03 | 0.21 | TRUE |
117 | The Cancer Genome Atlas | Rectum Adenocarcinoma | TRIM4 | 0.17 | 0.04 | blup | 52 | 0.08 | 6.6e-03 | 6.1 | -5.7 | 1.1e-08 | -0.40 | 0.02 | 0.19 | TRUE |
118 | The Cancer Genome Atlas | Rectum Adenocarcinoma | ZSCAN21 | 0.24 | 0.05 | blup | 41 | 0.10 | 2.9e-03 | -5.4 | -7.8 | 6.1e-15 | -0.61 | 0.02 | 0.32 | FALSE |
119 | The Cancer Genome Atlas | Soft Tissue Sarcoma | TRIM4 | 0.09 | 0.09 | lasso | 1 | 0.07 | 3.2e-05 | 6.0 | -6.0 | 1.8e-09 | -0.43 | 0.75 | 0.09 | FALSE |
120 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | TRIM4 | 0.16 | 0.04 | enet | 12 | 0.02 | 9.1e-02 | -4.8 | -5.8 | 7.1e-09 | -0.43 | 0.04 | 0.34 | FALSE |
121 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | ZKSCAN1 | 0.21 | 0.03 | blup | 38 | 0.12 | 3.8e-04 | 10.4 | 6.3 | 3.6e-10 | 0.77 | 0.00 | 0.80 | FALSE |
122 | The Cancer Genome Atlas | Stomach Adenocarcinoma | TRIM4 | 0.12 | 0.06 | blup | 52 | 0.09 | 5.6e-07 | 7.0 | -6.9 | 5.8e-12 | -0.54 | 0.01 | 0.99 | FALSE |
123 | The Cancer Genome Atlas | Thyroid Carcinoma | CNPY4 | 0.10 | 0.03 | lasso | 3 | 0.05 | 1.2e-05 | -5.5 | -8.0 | 1.1e-15 | -0.55 | 0.01 | 0.93 | FALSE |
124 | The Cancer Genome Atlas | Thyroid Carcinoma | TRIM4 | 0.16 | 0.30 | lasso | 9 | 0.30 | 9.9e-30 | 6.0 | -5.9 | 4.7e-09 | -0.43 | 0.99 | 0.01 | FALSE |