Best TWAS P=3.76e-09 · Best GWAS P=5e-09 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | BIN3 | 0.11 | 0.10 | enet | 11 | 0.10 | 1.4e-08 | 5.0 | 5.1 | 3.0e-07 | 0.79 | 0.16 | 0.84 | FALSE |
2 | GTEx | Adipose Subcutaneous | C8orf58 | 0.09 | 0.03 | lasso | 3 | 0.01 | 6.2e-02 | 5.6 | 5.7 | 1.2e-08 | 0.87 | 0.03 | 0.94 | FALSE |
3 | GTEx | Breast Mammary Tissue (Male) | BIN3 | 0.22 | 0.00 | lasso | 4 | -0.01 | 6.5e-01 | 5.7 | 5.2 | 2.3e-07 | 0.86 | 0.03 | 0.64 | FALSE |
4 | GTEx | Breast Mammary Tissue (Female) | BIN3 | 0.03 | 0.00 | lasso | 2 | 0.02 | 7.6e-02 | 5.4 | 5.2 | 1.7e-07 | 0.84 | 0.04 | 0.26 | FALSE |
5 | GTEx | Esophagus Mucosa | BIN3 | 0.13 | 0.09 | lasso | 3 | 0.10 | 5.4e-07 | 5.1 | 5.3 | 1.1e-07 | 0.90 | 0.03 | 0.97 | FALSE |
6 | GTEx | Lung | CCAR2 | 0.11 | 0.07 | enet | 11 | 0.08 | 2.0e-06 | 5.4 | 5.5 | 3.3e-08 | 0.94 | 0.02 | 0.98 | FALSE |
7 | GTEx | Ovary | BIN3 | 0.38 | 0.24 | lasso | 5 | 0.30 | 4.0e-08 | 5.6 | 5.3 | 1.2e-07 | 0.82 | 0.03 | 0.96 | FALSE |
8 | GTEx | Skin Not Sun Exposed Suprapubic | BIN3 | 0.09 | 0.09 | lasso | 2 | 0.08 | 2.5e-05 | 5.7 | 5.7 | 1.5e-08 | 0.92 | 0.02 | 0.98 | FALSE |
9 | GTEx | Skin Not Sun Exposed Suprapubic | CCAR2 | 0.11 | 0.08 | lasso | 4 | 0.05 | 8.8e-04 | 5.6 | 5.5 | 3.9e-08 | 0.92 | 0.02 | 0.98 | FALSE |
10 | GTEx | Whole Blood | C8orf58 | 0.05 | 0.03 | lasso | 4 | 0.02 | 5.5e-03 | 5.4 | 5.2 | 1.7e-07 | 0.90 | 0.02 | 0.92 | FALSE |
11 | METSIM | Adipose | C8orf58 | 0.04 | 0.02 | enet | 13 | 0.02 | 1.1e-03 | 4.7 | 5.2 | 2.5e-07 | 0.80 | 0.14 | 0.85 | FALSE |
12 | ROSMAP | Brain Pre-frontal Cortex | CTD-3247F14.2 | 0.10 | 0.12 | lasso | 3 | 0.12 | 1.5e-14 | 5.6 | 5.8 | 8.2e-09 | 0.92 | 0.01 | 0.99 | FALSE |
13 | YFS | Blood | KIAA1967 | 0.05 | 0.04 | bslmm | 505 | 0.04 | 2.4e-12 | 5.8 | 5.2 | 2.3e-07 | 0.86 | 0.00 | 1.00 | FALSE |
14 | The Cancer Genome Atlas | Lung Adenocarcinoma | BIN3 | 0.04 | 0.03 | lasso | 4 | 0.04 | 3.6e-05 | 5.8 | 5.9 | 3.8e-09 | 0.99 | 0.00 | 0.99 | TRUE |