TWAS
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Models
Genes
Traits
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Traits
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Lung FEV1/FVC ratio
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chr8:140,969,818-142,706,843
Best TWAS P=8.95e-08 · Best GWAS P=1.1e-07 conditioned to 0.0458
141M
141.2M
141.4M
141.6M
141.8M
142M
142.2M
142.4M
142.6M
142.8M
0
2
4
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Brain Cerebellum
PTK2
0.25
0.22
lasso
3
0.31
6.6e-10
3.5
-5.3
9.0e-08
-0.55
0.14
0.57
TRUE
3
The Cancer Genome Atlas
Brain Lower Grade Glioma
DENND3
0.06
0.03
blup
98
0.04
4.0e-05
3.2
-5.3
9.1e-08
-0.13
0.01
0.13
TRUE
2
ROSMAP
Brain Pre-frontal Cortex
PTK2
0.05
0.07
lasso
4
0.07
5.4e-09
5.2
-5.1
2.8e-07
-0.94
0.07
0.92
FALSE