Best TWAS P=1.51e-11 · Best GWAS P=2.81e-12 conditioned to 0.0481
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Brain Caudate basal ganglia | CCDC171 | 0.30 | 0.18 | lasso | 4 | 0.23 | 2.4e-07 | 6.3 | -6.4 | 1.7e-10 | 0.85 | 0.23 | 0.76 | FALSE |
2 | GTEx | Brain Cerebellar Hemisphere | CCDC171 | 0.46 | 0.19 | lasso | 7 | 0.23 | 1.3e-06 | -6.0 | -6.2 | 6.6e-10 | 0.84 | 0.21 | 0.75 | FALSE |
3 | GTEx | Brain Cerebellum | CCDC171 | 0.46 | 0.22 | lasso | 7 | 0.15 | 3.4e-05 | -6.3 | -6.5 | 1.0e-10 | 0.88 | 0.14 | 0.85 | FALSE |
4 | GTEx | Brain Cortex | CCDC171 | 0.26 | 0.15 | lasso | 2 | 0.16 | 2.8e-05 | -6.6 | -6.8 | 1.5e-11 | 0.92 | 0.15 | 0.77 | TRUE |
5 | GTEx | Brain Frontal Cortex BA9 | CCDC171 | 0.27 | 0.18 | enet | 10 | 0.19 | 8.3e-06 | 6.3 | -5.5 | 2.9e-08 | 0.76 | 0.21 | 0.62 | FALSE |
6 | GTEx | Brain Hypothalamus | CCDC171 | 0.32 | 0.17 | enet | 6 | 0.09 | 4.0e-03 | -6.0 | -5.5 | 3.5e-08 | 0.82 | 0.12 | 0.60 | FALSE |
7 | GTEx | Nerve Tibial | CCDC171 | 0.25 | 0.16 | lasso | 6 | 0.14 | 2.1e-10 | -6.5 | -6.6 | 5.6e-11 | 0.89 | 0.10 | 0.90 | FALSE |
8 | GTEx | Ovary | CCDC171 | 0.21 | 0.19 | lasso | 4 | 0.16 | 7.7e-05 | 5.9 | 6.1 | 9.8e-10 | -0.76 | 0.17 | 0.47 | FALSE |
9 | GTEx | Pituitary | CCDC171 | 0.28 | 0.16 | enet | 29 | 0.12 | 5.2e-04 | 6.5 | -6.4 | 1.8e-10 | 0.85 | 0.15 | 0.80 | FALSE |
10 | METSIM | Adipose | CCDC171 | 0.03 | 0.00 | blup | 828 | 0.01 | 4.0e-02 | 6.3 | -5.5 | 4.8e-08 | 0.77 | 0.11 | 0.77 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | CCDC171 | 0.14 | 0.11 | enet | 21 | 0.11 | 8.3e-14 | 6.2 | -5.9 | 4.3e-09 | 0.74 | 0.37 | 0.63 | FALSE |