Best TWAS P=7.3e-10 · Best GWAS P=2.68e-10 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ADD3 | 0.06 | 0.03 | bslmm | 385 | 0.04 | 8.5e-06 | -2.8 | -5.5 | 5.0e-08 | 0.61 | 0.16 | 0.23 | FALSE |
2 | GTEx | Adipose Visceral Omentum | ADD3 | 0.06 | 0.03 | enet | 7 | 0.04 | 4.1e-03 | -6.1 | -6.2 | 7.3e-10 | 0.96 | 0.03 | 0.95 | TRUE |
3 | GTEx | Artery Aorta | ADD3 | 0.12 | 0.10 | lasso | 3 | 0.11 | 9.4e-07 | -5.3 | -5.4 | 6.1e-08 | 0.85 | 0.05 | 0.95 | FALSE |
4 | GTEx | Brain Cerebellar Hemisphere | ADD3 | 0.40 | 0.34 | lasso | 6 | 0.45 | 4.2e-13 | -5.3 | -5.7 | 1.5e-08 | 0.89 | 0.18 | 0.82 | FALSE |
5 | GTEx | Brain Cerebellum | ADD3 | 0.36 | 0.31 | lasso | 11 | 0.33 | 1.4e-10 | -5.3 | -5.4 | 5.2e-08 | 0.84 | 0.39 | 0.61 | FALSE |
6 | GTEx | Breast Mammary Tissue | ADD3 | 0.08 | 0.05 | lasso | 3 | 0.04 | 3.4e-03 | -5.3 | -5.6 | 1.7e-08 | 0.85 | 0.03 | 0.83 | FALSE |
7 | GTEx | Breast Mammary Tissue (Female) | ADD3 | 0.07 | 0.02 | lasso | 1 | 0.09 | 1.3e-03 | -5.3 | -5.3 | 1.4e-07 | 0.84 | 0.04 | 0.45 | FALSE |
8 | GTEx | Colon Sigmoid | ADD3 | 0.10 | 0.04 | lasso | 7 | 0.03 | 3.3e-02 | -4.9 | -5.3 | 1.2e-07 | 0.91 | 0.03 | 0.90 | FALSE |
9 | GTEx | Heart Left Ventricle | ADD3 | 0.10 | 0.02 | enet | 17 | 0.03 | 1.2e-02 | -6.1 | -5.3 | 1.2e-07 | 0.79 | 0.03 | 0.96 | FALSE |
10 | GTEx | Lung | ADD3 | 0.07 | 0.05 | lasso | 4 | 0.04 | 2.2e-04 | -5.1 | -5.2 | 2.0e-07 | 0.79 | 0.33 | 0.62 | FALSE |
11 | GTEx | Nerve Tibial | ADD3 | 0.08 | 0.07 | lasso | 3 | 0.04 | 4.3e-04 | -5.3 | -5.8 | 7.6e-09 | 0.88 | 0.03 | 0.97 | FALSE |
12 | GTEx | Pituitary | ADD3 | 0.27 | 0.05 | enet | 9 | 0.08 | 4.0e-03 | -4.2 | -5.3 | 1.2e-07 | 0.86 | 0.12 | 0.66 | FALSE |
13 | GTEx | Spleen | XPNPEP1 | 0.25 | 0.04 | lasso | 5 | 0.05 | 2.4e-02 | -4.2 | -5.2 | 2.4e-07 | 0.69 | 0.04 | 0.54 | FALSE |
14 | GTEx | Spleen | ADD3 | 0.36 | 0.27 | lasso | 5 | 0.28 | 7.2e-08 | -5.3 | -6.0 | 1.7e-09 | 0.90 | 0.06 | 0.91 | FALSE |
15 | GTEx | Thyroid | ADD3 | 0.06 | 0.00 | enet | 4 | 0.01 | 1.2e-01 | -5.4 | -5.7 | 1.2e-08 | 0.89 | 0.04 | 0.77 | FALSE |
16 | ROSMAP | Brain Pre-frontal Cortex | ADD3 | 0.04 | 0.03 | lasso | 4 | 0.02 | 2.1e-03 | -5.7 | -5.8 | 7.3e-09 | 0.97 | 0.02 | 0.97 | FALSE |