Best TWAS P=2.46e-12 · Best GWAS P=3.61e-11 conditioned to 0.0495
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Esophagus Mucosa | MRPS35 | 0.18 | 0.00 | enet | 20 | 0.01 | 6.6e-02 | -3.6 | 5.6 | 2.2e-08 | -0.31 | 0.07 | 0.36 | FALSE |
2 | YFS | Blood | MRPS35 | 0.04 | 0.02 | enet | 8 | 0.03 | 3.3e-09 | -3.7 | 6.3 | 2.7e-10 | -0.79 | 0.06 | 0.94 | FALSE |
3 | The Cancer Genome Atlas | Breast Invasive Carcinoma | LOC100133893 | 0.04 | 0.08 | blup | 33 | 0.10 | 3.6e-19 | -6.0 | -6.7 | 2.9e-11 | 0.79 | 0.02 | 0.98 | FALSE |
4 | The Cancer Genome Atlas | Colon Adenocarcinoma | LOC100133893 | 0.07 | 0.03 | blup | 33 | 0.07 | 7.1e-05 | -5.8 | -6.0 | 2.6e-09 | 0.72 | 0.02 | 0.94 | FALSE |
5 | The Cancer Genome Atlas | Glioblastoma Multiforme | LOC100133893 | 0.12 | 0.05 | lasso | 4 | 0.07 | 3.5e-03 | -6.0 | -6.5 | 5.6e-11 | 0.82 | 0.02 | 0.55 | FALSE |
6 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LOC100133893 | 0.07 | 0.10 | blup | 33 | 0.11 | 1.2e-12 | -6.4 | -7.0 | 2.5e-12 | 0.76 | 0.01 | 0.99 | TRUE |
7 | The Cancer Genome Atlas | Lung Adenocarcinoma | LOC100133893 | 0.09 | 0.19 | lasso | 7 | 0.18 | 2.8e-20 | -6.4 | -6.7 | 3.0e-11 | 0.75 | 0.01 | 0.99 | FALSE |
8 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | LOC100133893 | 0.03 | 0.03 | blup | 33 | 0.03 | 5.4e-04 | -4.9 | -6.2 | 5.4e-10 | 0.68 | 0.04 | 0.95 | FALSE |
9 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | LOC100133893 | 0.04 | 0.01 | blup | 33 | 0.03 | 2.1e-03 | -5.0 | -5.7 | 1.3e-08 | 0.70 | 0.02 | 0.64 | FALSE |
10 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | LOC100133893 | 0.06 | 0.04 | blup | 33 | 0.04 | 1.0e-02 | -6.0 | -6.8 | 9.7e-12 | 0.77 | 0.01 | 0.75 | FALSE |
11 | The Cancer Genome Atlas | Stomach Adenocarcinoma | KLHDC5 | 0.06 | 0.04 | blup | 55 | 0.02 | 6.3e-03 | -5.8 | 6.6 | 4.3e-11 | -0.58 | 0.02 | 0.94 | FALSE |
12 | The Cancer Genome Atlas | Stomach Adenocarcinoma | LOC100133893 | 0.08 | 0.09 | lasso | 2 | 0.08 | 2.8e-06 | -5.0 | -5.3 | 1.3e-07 | 0.47 | 0.15 | 0.80 | FALSE |
13 | The Cancer Genome Atlas | Thyroid Carcinoma | LOC100133893 | 0.06 | 0.06 | lasso | 4 | 0.06 | 2.1e-06 | -6.4 | -6.6 | 4.9e-11 | 0.80 | 0.01 | 0.99 | FALSE |