TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Lung FEV1/FVC ratio
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chr16:3,608,256-5,251,131
Best TWAS P=1.27e-14 · Best GWAS P=3.32e-14 conditioned to 1
3.6M
3.8M
4M
4.2M
4.4M
4.6M
4.8M
5M
5.2M
0
5
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
GTEx
Thyroid
RP11-95P2.1
0.15
0.10
lasso
5
0.10
3.9e-08
-7.2
7.7
1.3e-14
-0.96
0.03
0.97
TRUE
2
GTEx
Brain Nucleus accumbens basal ganglia
HMOX2
0.28
-0.01
lasso
5
-0.01
7.1e-01
-4.8
5.2
2.0e-07
0.09
0.08
0.06
TRUE
3
GTEx
Cells Transformed fibroblasts
RP11-95P2.1
0.13
0.11
lasso
3
0.12
2.0e-09
-6.7
7.2
7.4e-13
-0.80
0.11
0.89
FALSE
1
GTEx
Adipose Subcutaneous
RP11-95P2.1
0.12
0.01
lasso
3
0.02
1.0e-02
-6.6
6.5
8.2e-11
-0.63
0.04
0.23
FALSE