Best TWAS P=5.71e-09 · Best GWAS P=1.08e-16 conditioned to 5.15e-16
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | DFFA | 0.11 | 0.08 | enet | 8 | 0.06 | 1.3e-05 | -4.2 | 5.2 | 2.6e-07 | 0.03 | 0.40 | 0.51 | FALSE |
2 | GTEx | Cells Transformed fibroblasts | PGD | 0.47 | 0.56 | enet | 15 | 0.55 | 7.5e-49 | -5.2 | -5.1 | 2.8e-07 | 0.02 | 0.04 | 0.96 | FALSE |
3 | GTEx | Esophagus Mucosa | GPR157 | 0.18 | 0.08 | lasso | 4 | 0.09 | 1.3e-06 | 5.5 | 5.7 | 1.6e-08 | 0.04 | 0.96 | 0.00 | FALSE |
4 | GTEx | Lung | KIF1B | 0.09 | 0.11 | lasso | 2 | 0.10 | 7.8e-08 | -5.6 | -5.5 | 3.2e-08 | 0.02 | 0.01 | 0.99 | FALSE |
5 | GTEx | Skin Sun Exposed Lower leg | GPR157 | 0.18 | 0.09 | lasso | 2 | 0.09 | 7.6e-08 | 5.9 | 5.8 | 5.7e-09 | 0.02 | 0.99 | 0.00 | TRUE |
6 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | PGD | 0.04 | 0.02 | blup | 52 | 0.03 | 2.6e-03 | -5.0 | -5.8 | 5.8e-09 | -0.01 | 0.01 | 0.90 | TRUE |
7 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | PGD | 0.09 | 0.02 | blup | 52 | 0.05 | 6.0e-03 | -3.2 | -5.1 | 2.7e-07 | -0.01 | 0.01 | 0.49 | FALSE |