Best TWAS P=1.03e-19 · Best GWAS P=4.86e-21 conditioned to 9.11e-05
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Colon Transverse | IL18R1 | 0.14 | 0.00 | enet | 41 | 0.00 | 2.1e-01 | -2.6 | -5.7 | 1.0e-08 | -0.17 | 0.07 | 0.04 | FALSE |
2 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | IL1RL1 | 0.04 | 0.03 | lasso | 7 | 0.03 | 8.1e-04 | 3.8 | 5.3 | 1.0e-07 | 0.50 | 0.20 | 0.26 | FALSE |
3 | The Cancer Genome Atlas | Breast Invasive Carcinoma | IL1RL1 | 0.02 | 0.01 | blup | 78 | 0.01 | 1.5e-03 | -7.9 | 7.6 | 3.3e-14 | 0.70 | 0.03 | 0.84 | FALSE |
4 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | IL1RL1 | 0.04 | 0.04 | lasso | 8 | 0.04 | 1.7e-05 | 7.1 | 6.6 | 5.0e-11 | 0.43 | 0.38 | 0.13 | FALSE |
5 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | IL18R1 | 0.06 | 0.01 | blup | 108 | 0.04 | 2.6e-05 | -2.0 | 6.2 | 4.5e-10 | 0.52 | 0.04 | 0.65 | FALSE |
6 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | IL1RL1 | 0.08 | 0.08 | enet | 9 | 0.08 | 1.2e-09 | 6.8 | 8.4 | 5.4e-17 | 0.60 | 0.98 | 0.02 | FALSE |
7 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | IL1RL1 | 0.18 | 0.06 | blup | 78 | 0.15 | 3.7e-09 | -7.9 | 9.1 | 1.0e-19 | 0.75 | 0.01 | 0.99 | TRUE |
8 | The Cancer Genome Atlas | Lung Adenocarcinoma | IL1RL1 | 0.03 | 0.01 | blup | 78 | 0.02 | 4.7e-03 | 6.5 | 7.9 | 2.9e-15 | 0.61 | 0.05 | 0.65 | FALSE |
9 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | IL1RL1 | 0.19 | 0.05 | blup | 78 | 0.10 | 7.1e-05 | -8.1 | 7.6 | 2.8e-14 | 0.64 | 0.15 | 0.60 | FALSE |
10 | The Cancer Genome Atlas | Thyroid Carcinoma | IL1RL1 | 0.05 | 0.03 | enet | 6 | 0.03 | 9.7e-04 | 6.8 | 6.8 | 8.3e-12 | 0.42 | 0.72 | 0.03 | FALSE |