Best TWAS P=5.48e-09 · Best GWAS P=3.86e-08 conditioned to 0.0668
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Aorta | C4orf32 | 0.12 | 0.11 | lasso | 5 | 0.10 | 6.3e-06 | -5.0 | 5.1 | 2.8e-07 | -0.57 | 0.04 | 0.96 | FALSE |
2 | GTEx | Brain Cerebellar Hemisphere | TIFA | 0.17 | 0.08 | lasso | 6 | 0.06 | 1.2e-02 | -4.6 | 5.3 | 1.3e-07 | -0.74 | 0.08 | 0.72 | FALSE |
3 | GTEx | Cells Transformed fibroblasts | C4orf32 | 0.21 | 0.24 | enet | 16 | 0.25 | 1.1e-18 | -5.3 | 5.5 | 4.8e-08 | -0.59 | 0.02 | 0.98 | FALSE |
4 | GTEx | Esophagus Muscularis | C4orf32 | 0.14 | 0.12 | lasso | 6 | 0.10 | 1.4e-06 | -5.1 | 5.5 | 3.2e-08 | -0.64 | 0.04 | 0.96 | FALSE |
5 | GTEx | Lung | C4orf32 | 0.11 | 0.06 | lasso | 3 | 0.05 | 6.6e-05 | -5.1 | 5.4 | 5.3e-08 | -0.60 | 0.03 | 0.97 | FALSE |
6 | GTEx | Muscle Skeletal | C4orf32 | 0.10 | 0.12 | lasso | 4 | 0.12 | 1.8e-11 | -5.3 | 5.3 | 1.0e-07 | -0.53 | 0.02 | 0.98 | FALSE |
7 | GTEx | Nerve Tibial | C4orf32 | 0.11 | 0.12 | lasso | 5 | 0.10 | 6.7e-08 | -5.1 | 5.2 | 2.3e-07 | -0.60 | 0.04 | 0.96 | FALSE |
8 | GTEx | Skin Sun Exposed Lower leg | C4orf32 | 0.07 | 0.03 | enet | 13 | 0.02 | 4.5e-03 | -5.2 | 5.3 | 1.5e-07 | -0.77 | 0.08 | 0.91 | FALSE |
9 | GTEx | Thyroid | AP1AR | 0.07 | 0.04 | enet | 18 | 0.05 | 1.5e-04 | -4.8 | -5.8 | 5.5e-09 | 0.73 | 0.11 | 0.87 | TRUE |
10 | ROSMAP | Brain Pre-frontal Cortex | TIFA | 0.07 | 0.09 | enet | 13 | 0.09 | 4.3e-12 | 4.7 | 5.2 | 2.1e-07 | -0.83 | 0.22 | 0.77 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | C4orf32 | 0.05 | 0.05 | enet | 13 | 0.05 | 6.7e-07 | -5.0 | 5.6 | 2.1e-08 | -0.72 | 0.09 | 0.91 | FALSE |
12 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | AP1AR | 0.02 | 0.00 | blup | 40 | 0.02 | 1.6e-03 | -3.9 | -5.3 | 1.5e-07 | 0.72 | 0.02 | 0.68 | FALSE |
13 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | C4orf32 | 0.09 | 0.09 | lasso | 3 | 0.08 | 1.2e-09 | -5.3 | 5.3 | 1.2e-07 | -0.50 | 0.00 | 1.00 | FALSE |
14 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | C4orf32 | 0.06 | 0.07 | blup | 47 | 0.04 | 6.9e-04 | -4.3 | 5.4 | 6.0e-08 | -0.69 | 0.04 | 0.83 | FALSE |
15 | The Cancer Genome Atlas | Thyroid Carcinoma | C4orf32 | 0.06 | 0.09 | blup | 48 | 0.08 | 3.1e-08 | -5.1 | 5.5 | 3.9e-08 | -0.66 | 0.01 | 0.99 | FALSE |