Best TWAS P=1.15e-16 · Best GWAS P=6.8e-15 conditioned to 0.985
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | RGMB-AS1 | 0.09 | 0.07 | lasso | 5 | 0.11 | 1.4e-09 | -6.8 | -7.4 | 1.5e-13 | 0.77 | 0.14 | 0.86 | FALSE |
2 | GTEx | Adipose Visceral Omentum | CTD-2007H13.3 | 0.08 | 0.01 | enet | 17 | 0.03 | 8.8e-03 | -4.6 | -6.4 | 1.6e-10 | 0.81 | 0.05 | 0.79 | FALSE |
3 | GTEx | Artery Tibial | CTD-2007H13.3 | 0.05 | 0.03 | lasso | 4 | 0.03 | 3.2e-03 | -5.0 | -6.2 | 6.1e-10 | 0.80 | 0.18 | 0.50 | FALSE |
4 | GTEx | Esophagus Mucosa | RGMB-AS1 | 0.08 | 0.03 | lasso | 6 | 0.01 | 3.4e-02 | -5.6 | -6.1 | 8.5e-10 | 0.69 | 0.37 | 0.11 | FALSE |
5 | GTEx | Lung | CTD-2007H13.3 | 0.05 | 0.04 | lasso | 2 | 0.03 | 3.9e-03 | -7.8 | -8.3 | 1.1e-16 | 0.94 | 0.01 | 0.97 | TRUE |
6 | GTEx | Nerve Tibial | RGMB-AS1 | 0.08 | 0.09 | enet | 5 | 0.06 | 3.4e-05 | -5.9 | -6.1 | 9.7e-10 | 0.47 | 0.88 | 0.03 | FALSE |
7 | GTEx | Pancreas | RGMB-AS1 | 0.28 | 0.07 | lasso | 6 | 0.05 | 5.1e-03 | -5.9 | -6.4 | 1.4e-10 | 0.59 | 0.07 | 0.58 | FALSE |
8 | GTEx | Testis | CHD1 | 0.15 | 0.08 | lasso | 4 | 0.08 | 1.4e-04 | -5.0 | 5.6 | 2.6e-08 | -0.80 | 0.03 | 0.94 | FALSE |
9 | GTEx | Testis | RGMB-AS1 | 0.44 | 0.50 | enet | 16 | 0.48 | 1.2e-23 | -6.1 | -6.0 | 2.0e-09 | 0.48 | 0.99 | 0.01 | FALSE |
10 | GTEx | Thyroid | RGMB-AS1 | 0.19 | 0.16 | lasso | 5 | 0.16 | 4.2e-12 | -6.5 | -6.1 | 1.1e-09 | 0.55 | 0.94 | 0.06 | FALSE |
11 | GTEx | Whole Blood | CTD-2007H13.3 | 0.04 | 0.03 | lasso | 4 | 0.02 | 1.1e-02 | -6.7 | -6.4 | 1.4e-10 | 0.91 | 0.04 | 0.92 | FALSE |
12 | METSIM | Adipose | RGMB | 0.03 | 0.01 | blup | 341 | 0.02 | 1.0e-03 | -5.9 | 5.9 | 4.5e-09 | -0.53 | 0.56 | 0.13 | FALSE |
13 | ROSMAP | Brain Pre-frontal Cortex | RGMB-AS1 | 0.03 | 0.01 | blup | 336 | 0.01 | 1.2e-02 | -6.1 | -7.0 | 1.9e-12 | 0.61 | 0.15 | 0.25 | FALSE |