Best TWAS P=1.41e-12 · Best GWAS P=8.36e-12 conditioned to 0.0647
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Tibial | CCDC171 | 0.10 | 0.09 | enet | 9 | 0.12 | 7.2e-10 | -4.6 | 5.1 | 3.1e-07 | 0.61 | 0.86 | 0.14 | FALSE |
2 | GTEx | Brain Caudate basal ganglia | CCDC171 | 0.30 | 0.18 | lasso | 4 | 0.23 | 2.4e-07 | -5.4 | 6.0 | 2.1e-09 | 0.84 | 0.44 | 0.55 | FALSE |
3 | GTEx | Brain Cerebellar Hemisphere | CCDC171 | 0.46 | 0.19 | lasso | 7 | 0.23 | 1.3e-06 | 6.3 | 7.1 | 1.4e-12 | 0.81 | 0.24 | 0.72 | TRUE |
4 | GTEx | Brain Cerebellum | CCDC171 | 0.46 | 0.22 | lasso | 7 | 0.15 | 3.4e-05 | 5.7 | 6.2 | 5.6e-10 | 0.84 | 0.22 | 0.76 | FALSE |
5 | GTEx | Brain Cortex | CCDC171 | 0.26 | 0.15 | lasso | 2 | 0.16 | 2.8e-05 | 5.5 | 5.8 | 6.4e-09 | 0.89 | 0.21 | 0.68 | FALSE |
6 | GTEx | Lung | CCDC171 | 0.13 | 0.03 | enet | 9 | 0.01 | 5.0e-02 | -5.1 | 6.0 | 1.9e-09 | 0.65 | 0.38 | 0.41 | FALSE |
7 | GTEx | Nerve Tibial | CCDC171 | 0.25 | 0.16 | lasso | 6 | 0.14 | 2.1e-10 | 5.5 | 5.6 | 1.8e-08 | 0.84 | 0.74 | 0.26 | FALSE |
8 | GTEx | Ovary | CCDC171 | 0.21 | 0.19 | lasso | 4 | 0.16 | 7.7e-05 | -5.6 | -5.8 | 6.6e-09 | -0.79 | 0.23 | 0.30 | FALSE |
9 | GTEx | Pituitary | CCDC171 | 0.28 | 0.16 | enet | 29 | 0.12 | 5.2e-04 | -5.0 | 5.7 | 1.5e-08 | 0.85 | 0.17 | 0.77 | FALSE |
10 | ROSMAP | Brain Pre-frontal Cortex | CCDC171 | 0.14 | 0.11 | enet | 21 | 0.11 | 8.3e-14 | -5.5 | 5.2 | 2.1e-07 | 0.75 | 0.94 | 0.06 | FALSE |