Best TWAS P=1.49e-71 · Best GWAS P=3.7e-66 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CCDC91 | 0.08 | 0.06 | lasso | 6 | 0.07 | 9.4e-09 | 14.1 | -15.1 | 1.1e-51 | 0.64 | 0.95 | 0.05 | FALSE |
2 | GTEx | Adipose Subcutaneous | RP11-967K21.1 | 0.08 | 0.02 | lasso | 8 | 0.01 | 2.1e-02 | -17.0 | -15.5 | 3.1e-54 | 0.90 | 0.03 | 0.94 | TRUE |
3 | GTEx | Adrenal Gland | CCDC91 | 0.16 | 0.01 | lasso | 16 | 0.03 | 3.5e-02 | -2.7 | 6.3 | 2.9e-10 | -0.11 | 0.15 | 0.08 | TRUE |
4 | GTEx | Adrenal Gland | RP11-967K21.1 | 0.22 | 0.02 | lasso | 4 | 0.02 | 6.5e-02 | -16.9 | -15.6 | 3.9e-55 | 0.90 | 0.02 | 0.79 | FALSE |
5 | GTEx | Artery Aorta | CCDC91 | 0.16 | 0.00 | enet | 37 | 0.02 | 4.1e-02 | 13.8 | 15.3 | 4.9e-53 | -0.49 | 0.28 | 0.27 | FALSE |
6 | GTEx | Artery Aorta | RP11-967K21.1 | 0.07 | 0.02 | lasso | 7 | 0.01 | 7.9e-02 | -16.0 | -17.9 | 1.5e-71 | 0.79 | 0.18 | 0.48 | TRUE |
7 | GTEx | Artery Coronary | RP11-967K21.1 | 0.18 | 0.12 | lasso | 7 | 0.07 | 1.8e-03 | -17.1 | -17.1 | 8.1e-66 | 0.96 | 0.02 | 0.96 | TRUE |
8 | GTEx | Artery Tibial | RP11-967K21.1 | 0.09 | 0.10 | lasso | 11 | 0.07 | 2.4e-06 | -15.8 | -16.8 | 1.6e-63 | 0.90 | 0.16 | 0.84 | FALSE |
9 | GTEx | Cells Transformed fibroblasts | CCDC91 | 0.10 | 0.10 | lasso | 5 | 0.09 | 5.5e-07 | 12.8 | 13.0 | 8.2e-39 | -0.48 | 0.97 | 0.01 | FALSE |
10 | GTEx | Cells Transformed fibroblasts | RP11-967K21.1 | 0.07 | 0.07 | lasso | 2 | 0.07 | 3.7e-06 | 13.0 | -13.7 | 5.2e-43 | 0.54 | 0.93 | 0.05 | FALSE |
11 | GTEx | Colon Transverse | CCDC91 | 0.11 | 0.01 | lasso | 6 | 0.00 | 4.6e-01 | 13.3 | 16.9 | 3.4e-64 | -0.72 | 0.24 | 0.33 | FALSE |
12 | GTEx | Colon Transverse | RP11-967K21.1 | 0.12 | 0.07 | lasso | 8 | 0.05 | 1.6e-03 | -15.8 | -16.7 | 7.4e-63 | 0.89 | 0.06 | 0.91 | FALSE |
13 | GTEx | Esophagus Mucosa | MRPS35 | 0.18 | 0.00 | enet | 20 | 0.01 | 6.6e-02 | 2.9 | -11.0 | 2.4e-28 | 0.15 | 0.09 | 0.18 | TRUE |
14 | GTEx | Esophagus Mucosa | CCDC91 | 0.18 | 0.04 | enet | 36 | 0.03 | 3.1e-03 | -16.0 | 12.3 | 7.4e-35 | -0.39 | 0.18 | 0.59 | FALSE |
15 | GTEx | Esophagus Muscularis | RP11-967K21.1 | 0.07 | 0.06 | lasso | 5 | 0.04 | 2.2e-03 | -16.0 | -16.0 | 6.5e-58 | 0.87 | 0.08 | 0.76 | FALSE |
16 | GTEx | Esophagus Muscularis | RP11-860B13.1 | 0.19 | 0.07 | enet | 24 | 0.06 | 2.1e-04 | 3.4 | 10.1 | 3.3e-24 | -0.38 | 0.41 | 0.47 | TRUE |
17 | GTEx | Heart Atrial Appendage | CCDC91 | 0.10 | 0.06 | lasso | 8 | 0.04 | 4.4e-03 | 12.8 | 12.5 | 5.1e-36 | -0.50 | 0.44 | 0.07 | FALSE |
18 | GTEx | Heart Atrial Appendage | RP11-967K21.1 | 0.08 | 0.09 | lasso | 1 | 0.08 | 2.3e-04 | 13.0 | -13.0 | 1.4e-38 | 0.51 | 0.47 | 0.05 | TRUE |
19 | GTEx | Lung | CCDC91 | 0.14 | 0.00 | enet | 33 | 0.06 | 1.5e-05 | 3.3 | 8.4 | 4.5e-17 | -0.31 | 0.18 | 0.41 | FALSE |
20 | GTEx | Muscle Skeletal | RP11-967K21.1 | 0.04 | 0.01 | lasso | 9 | 0.00 | 2.9e-01 | 13.3 | -13.6 | 2.1e-42 | 0.51 | 0.29 | 0.09 | FALSE |
21 | GTEx | Pituitary | RP11-967K21.1 | 0.20 | 0.04 | lasso | 7 | 0.04 | 4.4e-02 | -13.7 | -13.0 | 8.3e-39 | 0.64 | 0.11 | 0.16 | FALSE |
22 | GTEx | Skin Not Sun Exposed Suprapubic | CCDC91 | 0.26 | 0.05 | lasso | 15 | 0.04 | 4.1e-03 | 13.3 | 12.8 | 2.3e-37 | -0.51 | 0.78 | 0.16 | FALSE |
23 | GTEx | Skin Sun Exposed Lower leg | CCDC91 | 0.09 | 0.01 | enet | 8 | 0.01 | 2.6e-02 | 13.0 | 13.3 | 1.2e-40 | -0.53 | 0.18 | 0.69 | FALSE |
24 | GTEx | Testis | PPFIBP1 | 0.23 | 0.00 | enet | 48 | 0.01 | 7.9e-02 | 5.7 | 6.3 | 2.4e-10 | -0.24 | 0.08 | 0.05 | FALSE |
25 | GTEx | Thyroid | CCDC91 | 0.15 | 0.12 | enet | 42 | 0.12 | 2.9e-09 | 13.8 | 14.1 | 3.1e-45 | -0.57 | 1.00 | 0.00 | FALSE |
26 | GTEx | Thyroid | RP11-967K21.1 | 0.05 | 0.00 | enet | 7 | 0.00 | 2.8e-01 | -13.9 | -15.0 | 5.5e-51 | 0.67 | 0.05 | 0.62 | TRUE |
27 | NTR | Blood | CCDC91 | 0.01 | 0.01 | blup | 648 | 0.00 | 9.0e-03 | -15.5 | 15.7 | 1.8e-55 | -0.75 | 0.08 | 0.80 | TRUE |
28 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CCDC91 | 0.04 | 0.04 | lasso | 3 | 0.03 | 1.8e-06 | 14.1 | 14.1 | 4.8e-45 | -0.55 | 1.00 | 0.00 | FALSE |
29 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CCDC91 | 0.06 | 0.02 | blup | 174 | 0.04 | 2.9e-05 | -15.8 | 17.6 | 4.8e-69 | -0.85 | 0.02 | 0.98 | FALSE |
30 | The Cancer Genome Atlas | Lung Adenocarcinoma | CCDC91 | 0.09 | 0.01 | blup | 170 | 0.02 | 1.0e-03 | 13.8 | 15.8 | 4.8e-56 | -0.64 | 0.19 | 0.66 | FALSE |
31 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | CCDC91 | 0.09 | 0.11 | lasso | 2 | 0.12 | 2.3e-05 | 13.8 | 13.8 | 2.8e-43 | -0.56 | 0.75 | 0.03 | FALSE |
32 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CCDC91 | 0.22 | 0.00 | enet | 16 | 0.04 | 2.5e-05 | 4.2 | 8.6 | 1.0e-17 | -0.24 | 0.02 | 0.06 | FALSE |
33 | The Cancer Genome Atlas | Thyroid Carcinoma | CCDC91 | 0.40 | 0.12 | blup | 175 | 0.14 | 4.9e-13 | 13.6 | 11.4 | 2.6e-30 | -0.36 | 1.00 | 0.00 | FALSE |